Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 2050.8 975 100.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1694.5 974 81.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1689.9 973 80.6
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1683.3 973 80.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1680.2 976 81.0
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1679.1 977 80.9
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1672.1 973 79.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1667.1 975 79.9
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1662.9 959 80.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1662.9 976 80.1
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1657.5 975 79.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1655.2 978 79.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1653.3 973 79.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1651.3 974 79.3
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1650.2 989 78.5
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1650.2 975 79.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1646.7 977 78.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 973 78.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1638.6 972 78.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1636.7 972 78.2
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 975 77.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 973 77.1
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 978 78.4
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 977 77.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1616.3 971 77.1
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 978 77.7
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 972 77.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1611.7 976 77.9
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 977 76.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 978 77.6
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 967 78.4
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1602.8 974 76.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1598.9 967 77.6
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 967 77.5
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1595.1 976 76.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1595.1 975 76.1
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 984 76.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1592.8 962 77.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 971 76.7
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 954 77.9
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1584.7 965 76.8
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1582.4 971 76.6
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1581.2 970 75.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 979 76.7
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 975 76.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 974 76.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 980 75.6
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 974 75.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 974 75.2
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 971 75.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1566.6 969 76.0
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 971 75.2
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 969 76.3
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 972 74.8
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 963 74.9
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 976 75.5
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 975 74.3
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 971 75.4
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 972 75.9
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 973 74.7
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 973 74.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 970 74.6
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 971 74.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1555.0 969 76.0
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1552.0 976 74.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 987 74.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1547.7 925 78.7
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 975 73.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1546.2 968 75.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 970 74.1
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 972 72.8
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 982 74.1
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 970 73.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1529.6 975 73.1
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 979 73.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 969 74.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1527.3 974 73.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 973 73.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 979 74.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1518.1 976 72.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1515.4 979 73.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 942 75.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1511.1 962 73.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 977 73.0
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 963 73.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1495.3 974 71.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1494.2 975 72.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 973 72.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 979 72.2
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 973 71.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 968 71.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 983 72.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 978 71.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1479.9 966 70.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 978 71.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1477.2 978 71.0
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1475.3 976 71.2
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1473.0 997 71.5
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 978 71.1
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1469.5 979 69.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 974 69.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1462.6 875 76.7
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 974 69.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 850 79.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1458.0 978 70.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1458.0 979 70.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 979 70.4
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1454.5 979 70.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 979 70.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 979 70.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 979 70.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 868 77.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 985 69.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 979 70.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 978 70.1
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 854 77.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1386.7 1006 65.3
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1386.7 993 67.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1380.5 980 67.4
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1338.6 762 80.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1336.2 980 67.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1313.5 982 65.6
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1298.1 769 78.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1265.0 788 75.6
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1257.7 851 69.7
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1203.0 789 71.6
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1177.5 787 70.6
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 8.9e-307 1057.0 686 72.3
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 5.8e-306 1054.3 978 53.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.7e-295 1018.8 961 52.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.3e-285 984.9 704 67.8
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.2e-274 950.3 967 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 8.4e-273 944.1 964 49.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.5e-264 916.0 975 48.7
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.7e-261 904.8 563 75.3
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 9.4e-232 807.7 900 47.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.1e-198 696.4 403 79.2
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 3.7e-135 486.9 412 59.7
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.0e-132 478.8 287 79.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 5.3e-118 429.9 376 60.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 5.0e-116 423.3 343 62.1
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 5.4e-102 376.7 214 83.2
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.7e-87 327.4 193 81.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.6e-85 322.0 275 59.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.0e-84 317.8 202 70.3
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.3e-75 286.6 159 80.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.3e-68 265.8 214 59.8
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 8.1e-66 256.5 143 81.8
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-64 252.7 156 74.4
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.6e-59 233.8 639 29.3
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.7e-53 214.9 376 39.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.5e-48 197.6 149 61.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-42 179.5 148 58.8
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 8.1e-42 176.8 94 83.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.3e-41 174.1 163 50.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.8e-39 167.9 783 24.3
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.9e-36 157.9 97 80.4
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 8.7e-36 156.8 148 54.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.1e-33 148.3 107 63.6
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.5e-30 138.7 93 68.8
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-26 126.3 88 64.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 6.9e-25 120.6 118 52.5
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 8.5e-23 113.6 183 37.2
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.5e-19 102.8 127 44.1
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.1e-17 96.7 182 33.5
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.4e-17 95.5 308 27.6
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-13 83.2 114 43.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.4e-11 74.7 57 59.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 9.7e-11 73.6 48 77.1
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.3e-10 73.2 60 61.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.2e-08 66.6 78 44.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.9e-07 62.0 74 44.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.2e-06 58.2 45 64.4


User provided reference genes

Program Settings