Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.0e-157 560.1 284 100.0
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.9e-53 212.6 207 57.5
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.6e-49 199.9 203 53.7
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.5e-49 199.1 320 43.4
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 5.8e-49 198.7 203 53.2
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.2e-47 192.6 171 61.4
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.2e-47 192.6 171 61.4
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.2e-47 192.6 171 61.4
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.6e-46 189.1 171 60.2
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 4.6e-46 189.1 218 51.8
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.8e-45 187.2 214 52.3
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.9e-44 183.7 174 56.3
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.2e-41 174.5 143 65.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.5e-41 174.1 198 53.5
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.6e-41 173.3 179 53.1
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.6e-41 173.3 159 57.9
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 5.8e-41 172.2 159 57.2
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.3e-40 171.0 183 51.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.2e-40 170.2 162 57.4
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.8e-40 169.5 284 39.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.9e-40 169.1 174 56.9
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.9e-40 169.1 174 56.9
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 6.5e-40 168.7 160 58.8
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 6.5e-40 168.7 201 48.8
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 8.4e-40 168.3 160 58.1
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-39 167.9 174 56.3
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.1e-39 167.9 192 53.1
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.4e-39 167.5 201 51.7
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.9e-39 167.2 172 51.7
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-39 167.2 162 56.8
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.2e-39 166.4 134 64.9
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.2e-39 166.4 179 55.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.2e-39 166.4 179 55.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.2e-39 166.4 179 55.3
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.2e-39 166.0 162 56.2
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 7.1e-39 165.2 160 57.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 9.3e-39 164.9 152 59.2
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.2e-38 164.5 161 54.7
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.2e-38 164.5 147 59.2
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.6e-38 164.1 156 58.3
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.1e-38 163.7 262 43.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.7e-38 163.3 164 53.7
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.5e-38 162.9 205 49.8
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.9e-38 161.8 168 55.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 7.9e-38 161.8 161 55.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 7.9e-38 161.8 174 55.7
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.8e-37 160.6 144 58.3
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.3e-37 160.2 252 41.7
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.3e-37 160.2 172 55.8
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.0e-37 159.8 268 40.7
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.1e-37 159.1 148 60.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 6.7e-37 158.7 156 55.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.9e-36 157.1 271 40.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 4.3e-36 156.0 148 58.1
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 4.3e-36 156.0 151 55.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 5.7e-36 155.6 151 55.0
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.7e-36 155.6 131 64.1
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.6e-35 154.1 287 41.1
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.8e-35 153.3 147 56.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 3.7e-35 152.9 182 51.6
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.7e-35 152.9 113 69.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.7e-35 152.9 167 49.1
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 6.3e-35 152.1 144 56.2
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 8.2e-35 151.8 136 59.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.1e-34 151.4 151 55.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.1e-34 151.4 145 58.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.4e-34 151.0 113 68.1
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 2.4e-34 150.2 181 49.7
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.4e-34 150.2 139 57.6
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.4e-34 150.2 136 58.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.4e-34 150.2 136 58.1
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 2.4e-34 150.2 139 61.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 3.1e-34 149.8 149 57.7
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.3e-34 149.1 197 46.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.2e-33 147.9 145 54.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.6e-33 146.7 228 42.1
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 3.4e-33 146.4 170 48.8
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 4.5e-33 146.0 290 40.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.6e-33 145.2 227 41.9
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.7e-32 144.1 142 52.8
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 3.8e-32 142.9 186 46.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.8e-32 142.9 151 53.0
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.4e-31 141.0 153 54.2
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.4e-31 141.0 147 55.1
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.9e-31 140.6 137 56.2
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.2e-31 139.8 153 54.2
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.6e-30 136.3 145 53.8
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.6e-30 136.0 147 53.7
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 8.7e-29 131.7 142 54.2
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 7.4e-28 128.6 186 43.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 9.7e-28 128.3 148 47.3
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.2e-27 127.1 207 41.5
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 4.8e-27 125.9 102 60.8
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.4e-26 123.6 191 42.4
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.1e-26 123.2 110 56.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.0e-25 120.6 126 51.6
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.0e-25 120.6 126 51.6
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 4.5e-25 119.4 207 41.5
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.9e-25 119.0 99 63.6
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.7e-24 117.5 268 36.9
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.9e-24 116.7 225 37.3
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 8.5e-24 115.2 118 53.4
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.1e-23 114.8 121 54.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.1e-23 114.8 158 49.4
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.4e-23 114.4 225 36.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 9.4e-23 111.7 169 43.8
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 9.4e-23 111.7 151 45.0
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.6e-22 109.8 93 60.2
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 6.1e-22 109.0 122 51.6
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 7.9e-22 108.6 210 39.5
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 1.0e-21 108.2 147 43.5
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.1e-20 104.8 86 59.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 4.3e-20 102.8 92 60.9
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 9.7e-20 101.7 88 60.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.5e-17 94.4 130 46.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.8e-16 89.7 77 57.1
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 6.7e-13 79.0 88 51.1
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.6e-12 77.0 61 59.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.2e-11 72.0 57 64.9
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 7.7e-09 65.5 100 42.0


User provided reference genes

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