Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.8e-112 408.7 216 100.0
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 3.1e-87 325.5 230 76.5
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 1.0e-85 320.5 230 75.7
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 2.2e-85 319.3 230 75.2
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 3.8e-85 318.5 230 75.2
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 5.0e-85 318.2 230 74.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.5e-85 317.4 231 74.9
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 8.5e-85 317.4 231 74.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 8.5e-85 317.4 230 74.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-84 316.6 230 73.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 1.9e-84 316.2 230 74.8
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.5e-84 315.8 230 72.6
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 3.2e-84 315.5 230 75.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 4.2e-84 315.1 229 75.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 7.2e-84 314.3 230 73.5
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 7.2e-84 314.3 230 72.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.7e-83 311.6 227 74.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 4.7e-83 311.6 230 73.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.7e-83 311.6 243 70.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 4.7e-83 311.6 230 73.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.1e-83 311.2 228 73.2
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.3e-82 309.3 240 70.4
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 5.2e-82 308.1 230 73.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 6.8e-82 307.8 230 73.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 8.8e-82 307.4 230 73.5
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 3.4e-81 305.4 249 67.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 4.4e-81 305.1 226 73.5
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 1.3e-80 303.5 230 71.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 2.8e-80 302.4 234 71.4
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 3.7e-80 302.0 245 68.6
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.7e-80 302.0 226 72.1
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 4.9e-80 301.6 230 70.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 6.3e-80 301.2 227 74.0
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 8.3e-80 300.8 230 72.6
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 8.3e-80 300.8 230 73.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.4e-79 300.1 246 67.9
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.4e-79 300.1 230 70.0
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-79 299.7 245 68.2
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 2.4e-79 299.3 230 72.2
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 3.1e-79 298.9 230 71.3
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 3.1e-79 298.9 230 72.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 7.0e-79 297.7 235 71.1
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 2.0e-78 296.2 230 71.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 2.0e-78 296.2 230 71.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 2.7e-78 295.8 232 70.3
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.5e-78 295.4 225 73.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 3.5e-78 295.4 236 70.3
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 3.5e-78 295.4 232 69.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 4.5e-78 295.0 230 72.2
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 7.7e-78 294.3 225 72.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 7.7e-78 294.3 226 73.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 7.7e-78 294.3 225 73.8
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-77 293.9 226 72.6
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.0e-77 293.9 226 72.6
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 1.3e-77 293.5 225 73.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.3e-77 293.5 234 68.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 1.7e-77 293.1 230 68.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 2.3e-77 292.7 225 72.4
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 2.9e-77 292.4 226 72.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 2.9e-77 292.4 225 72.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 5.0e-77 291.6 234 68.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.9e-76 289.7 227 70.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 3.3e-76 288.9 225 72.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 3.3e-76 288.9 231 69.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 4.3e-76 288.5 226 71.7
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 2.1e-75 286.2 234 67.1
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 2.1e-75 286.2 234 67.1
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 6.1e-75 284.6 225 71.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 6.1e-75 284.6 231 67.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.8e-74 283.1 234 67.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 2.3e-74 282.7 242 67.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 3.0e-74 282.3 226 71.2
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 3.0e-74 282.3 227 70.0
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 6.8e-74 281.2 226 69.5
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 2.6e-73 279.3 225 71.1
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.4e-73 278.9 227 68.3
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-72 276.6 226 69.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 2.9e-72 275.8 231 67.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 4.9e-72 275.0 232 66.4
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.1e-71 273.9 232 65.9
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 2.4e-71 272.7 227 67.4
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.4e-71 272.7 227 67.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 3.2e-71 272.3 257 59.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.6e-70 270.0 227 67.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.0e-69 267.3 227 66.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.3e-69 266.9 227 65.6
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.3e-69 266.9 228 66.2
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 2.3e-69 266.2 226 65.0
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 5.0e-69 265.0 232 62.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 8.6e-69 264.2 238 64.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 8.6e-69 264.2 241 62.7
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 1.1e-68 263.8 227 65.2
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.9e-68 263.1 250 61.2
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 5.6e-68 261.5 226 63.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 3.6e-67 258.8 238 61.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 4.7e-67 258.5 229 64.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 3.1e-66 255.8 274 55.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.0e-66 255.4 228 63.2
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.2e-64 249.6 225 65.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 1.1e-63 247.3 226 61.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.4e-63 246.1 230 61.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.1e-63 245.4 310 49.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.6e-62 243.4 234 56.8
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.3e-61 239.6 203 66.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.3e-61 239.6 225 56.9
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.5e-60 236.1 213 65.3
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 8.1e-59 231.1 163 74.8
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-52 209.9 236 48.7
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.3e-52 208.0 240 51.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.8e-50 203.4 148 73.6
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-46 190.7 109 91.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 2.1e-46 189.9 209 53.6
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.0e-45 186.0 176 59.1
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.3e-44 182.2 232 45.7
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 9.6e-44 181.0 232 44.4
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.6e-41 172.9 232 41.4
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 7.6e-41 171.4 242 39.7
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.3e-40 170.6 227 41.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 2.2e-40 169.9 109 80.7
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.8e-40 169.1 227 40.5
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-34 151.0 157 54.8
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 5.3e-34 148.7 95 76.8
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.4e-23 114.0 120 49.2
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 2.5e-20 103.2 94 59.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.0e-16 91.3 93 50.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.0e-14 82.0 242 26.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.3e-08 64.3 225 26.2
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.1e-07 61.2 278 22.3
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.5e-07 60.1 45 62.2
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 4.6e-06 55.8 82 46.3


User provided reference genes

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