Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 5.1e-154 547.7 282 100.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.3e-98 362.8 288 67.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.4e-97 358.6 253 69.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 7.4e-97 357.8 292 63.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.8e-96 355.1 288 64.6
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.1e-95 352.1 288 64.6
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.1e-95 352.1 273 65.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.2e-94 350.5 279 63.4
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.9e-94 348.2 255 67.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 7.7e-94 347.8 283 64.0
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.5e-92 342.8 286 61.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.2e-92 342.4 286 62.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.2e-92 342.0 280 64.6
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 5.5e-92 341.7 286 64.7
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 7.2e-92 341.3 283 61.1
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-91 340.5 288 61.5
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.7e-91 338.6 297 59.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.3e-90 336.3 284 62.7
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.3e-90 336.3 281 61.2
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 3.0e-90 335.9 283 61.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 5.2e-90 335.1 279 61.6
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 6.8e-90 334.7 284 61.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 6.8e-90 334.7 279 60.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 8.8e-90 334.3 283 60.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.0e-89 333.2 281 60.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.3e-88 330.5 271 61.6
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.7e-88 330.1 285 62.5
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.1e-87 327.4 285 61.8
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.1e-87 325.9 274 59.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.1e-87 325.5 278 61.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 7.0e-87 324.7 291 58.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.5e-86 322.4 274 59.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.5e-86 322.4 262 61.5
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.5e-86 322.0 281 60.5
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 2.2e-85 319.7 283 58.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.9e-85 319.3 283 58.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 5.0e-85 318.5 280 60.0
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 6.5e-85 318.2 251 61.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.5e-84 317.0 280 59.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.2e-84 315.5 289 59.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.2e-83 313.9 283 57.2
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.4e-82 310.5 302 55.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.3e-82 309.7 282 57.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.0e-82 309.3 252 62.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-81 307.0 275 58.2
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.0e-81 306.6 291 53.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 4.4e-81 305.4 290 54.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.7e-80 303.5 262 57.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.7e-80 302.4 279 55.9
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.7e-80 302.4 288 56.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 8.3e-80 301.2 294 52.4
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.1e-79 300.8 265 60.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.8e-79 300.1 293 54.9
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.4e-79 299.7 310 51.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.1e-79 299.3 271 57.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.1e-79 298.9 289 55.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 5.4e-79 298.5 250 58.4
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 7.0e-79 298.1 270 53.3
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 7.0e-79 298.1 274 56.6
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.7e-78 296.2 296 51.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.5e-78 295.8 251 60.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.7e-78 294.7 282 54.6
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.0e-77 294.3 268 59.0
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.0e-77 294.3 268 55.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.8e-77 292.4 246 58.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 6.6e-77 291.6 293 52.6
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 8.6e-77 291.2 288 54.5
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 8.6e-77 291.2 265 54.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.2e-76 288.9 271 55.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.6e-76 288.5 288 54.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.5e-76 287.7 286 53.5
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 9.5e-76 287.7 290 52.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.8e-74 283.5 269 53.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.5e-73 280.4 308 50.6
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-73 280.4 258 58.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.4e-73 279.3 269 52.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 7.5e-73 278.1 251 55.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 9.8e-73 277.7 254 58.7
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 9.8e-73 277.7 277 52.7
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.3e-72 277.3 287 52.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.7e-72 276.9 281 53.7
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.9e-72 276.2 181 73.5
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.4e-72 275.0 407 41.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.3e-72 274.6 293 53.6
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-71 274.2 305 51.1
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.1e-71 272.3 253 55.7
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.1e-71 272.3 268 53.4
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.2e-71 271.2 280 53.9
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.5e-70 269.2 245 56.3
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 5.9e-70 268.5 285 54.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-69 267.3 261 52.1
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.7e-69 266.9 243 52.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.7e-69 266.9 287 49.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.3e-69 266.5 272 52.9
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.6e-67 260.4 296 48.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-67 260.4 291 49.1
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.8e-67 259.6 291 49.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.8e-67 259.6 291 49.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 5.2e-66 255.4 288 50.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 5.2e-66 255.4 345 43.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.6e-65 253.1 344 43.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.6e-65 253.1 280 48.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 4.4e-65 252.3 269 50.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 5.8e-65 251.9 281 49.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.5e-65 251.5 280 48.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 4.9e-64 248.8 270 45.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 4.9e-64 248.8 270 45.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.1e-63 247.7 274 44.9
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.0e-61 241.1 283 43.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.1e-59 233.4 214 58.4
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-57 227.6 210 55.7
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-57 227.3 175 64.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.9e-56 222.2 280 45.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.7e-54 216.5 175 62.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-52 211.1 211 53.1
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-50 204.5 206 53.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.0e-50 202.6 140 70.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.2e-50 202.2 289 45.0
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.9e-41 171.4 181 54.7
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.4e-39 166.8 181 50.3
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-38 163.7 173 50.9
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.5e-38 162.9 183 47.5
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.5e-38 162.9 274 39.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.8e-38 161.8 280 36.1
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-35 154.5 124 61.3
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.6e-35 154.1 152 53.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.9e-34 148.7 102 65.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.0e-34 148.3 247 37.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.4e-31 140.2 167 49.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.2e-31 139.8 128 53.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.1e-30 137.1 180 44.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.7e-30 136.7 341 30.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.9e-30 135.2 458 29.3
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.0e-29 134.8 281 32.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.1e-28 131.3 244 34.4
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.1e-27 127.1 283 31.1
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 4.0e-26 122.9 198 40.4
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.9e-24 115.9 179 40.8
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.1e-23 112.1 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.7e-22 110.2 178 35.4
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.6e-22 109.4 256 33.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.7e-21 105.5 142 43.7
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.1e-20 104.8 239 32.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.2e-17 94.7 232 31.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.6e-17 93.6 111 49.5
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 5.8e-17 92.4 141 39.7
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 5.8e-17 92.4 141 39.7
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.4e-16 88.6 65 67.7
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.9e-15 87.4 65 63.1
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.5e-15 85.9 131 36.6
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-14 84.7 101 43.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-14 84.7 123 39.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.0e-13 81.6 61 67.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.9e-12 77.4 61 63.9
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 7.4e-12 75.5 90 50.0
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.1e-11 73.9 258 29.1
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.4e-10 70.5 80 46.2
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 3.1e-10 70.1 102 39.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.3e-08 64.7 75 49.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.2e-08 63.9 39 71.8
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 1.4e-07 61.2 91 39.6
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 1.4e-07 61.2 91 39.6


User provided reference genes

Program Settings