Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1369.4 666 100.0
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 663 83.6
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1148.3 663 83.3
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1135.9 662 81.4
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 662 81.1
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1132.5 663 81.1
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1130.2 661 82.0
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1128.6 663 81.4
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1127.5 674 80.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1127.5 662 80.8
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 661 81.4
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1120.5 663 80.5
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1120.1 663 79.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1118.6 663 81.3
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1115.1 662 80.7
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1114.4 663 79.5
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1113.6 662 79.6
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1113.6 662 80.5
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 673 79.0
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1112.1 663 79.9
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1104.0 663 80.5
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1103.2 663 78.4
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1101.3 663 77.7
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1099.3 663 79.2
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1098.2 663 78.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1097.8 662 78.2
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1097.8 663 79.2
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1092.8 664 78.5
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1092.8 663 78.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1091.6 663 79.2
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1090.9 663 78.4
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1089.7 663 79.3
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1087.4 663 78.9
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1085.1 663 78.0
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1084.3 681 76.8
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 663 78.4
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1082.8 663 78.6
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 662 79.0
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 678 77.0
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1080.9 663 76.6
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1080.1 663 77.7
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1078.2 663 78.1
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1077.0 663 78.3
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 9.1e-311 1069.7 666 77.6
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 9.1e-311 1069.7 663 77.2
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 2.9e-309 1064.7 662 76.3
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 1.1e-308 1062.8 664 76.5
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 1.4e-308 1062.4 664 75.8
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 1.4e-308 1062.4 664 75.8
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 2.5e-308 1061.6 664 75.8
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 5.5e-308 1060.4 664 76.1
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 5.5e-308 1060.4 664 76.1
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 5.5e-308 1060.4 662 77.2
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 7.2e-308 1060.1 664 77.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 9.4e-308 1059.7 664 75.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 1.6e-307 1058.9 665 75.9
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 4.7e-307 1057.4 665 75.9
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 6.1e-307 1057.0 663 77.2
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 7.9e-307 1056.6 664 75.6
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 7.9e-307 1056.6 664 75.2
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 3.0e-306 1054.7 664 75.8
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 2.0e-305 1052.0 665 75.2
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 7.4e-305 1050.0 664 75.5
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 1.3e-304 1049.3 661 74.9
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 1.7e-304 1048.9 664 76.1
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 3.7e-304 1047.7 664 75.5
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 4.8e-304 1047.3 664 76.1
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 6.3e-304 1047.0 664 75.8
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 8.2e-304 1046.6 664 75.6
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 4.1e-303 1044.3 664 75.2
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 1.6e-302 1042.3 675 75.6
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 4.5e-302 1040.8 664 75.5
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 4.5e-302 1040.8 664 76.4
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 2.2e-301 1038.5 661 74.7
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 5.0e-301 1037.3 674 74.0
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 7.2e-300 1033.5 683 74.7
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 9.4e-300 1033.1 691 72.2
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 3.7e-296 1021.1 662 73.6
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 1.3e-293 1012.7 662 73.6
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 2.5e-292 1008.4 694 71.8
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 9.4e-292 1006.5 661 72.9
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 2.7e-291 1005.0 664 73.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.8e-290 1000.3 628 76.8
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 5.7e-289 997.3 678 71.4
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 9.8e-289 996.5 663 71.9
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 1.4e-287 992.6 651 72.7
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.2e-286 989.6 603 78.9
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 1.1e-284 983.0 662 72.1
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 1.6e-283 979.2 663 72.7
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 2.4e-279 965.3 696 68.0
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.6e-273 945.3 724 66.7
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.2e-272 942.2 605 75.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 2.4e-271 938.7 666 69.4
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.3e-258 895.6 635 67.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.2e-247 858.6 623 66.5
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 8.1e-243 844.0 662 60.1
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.2e-239 831.6 663 64.6
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.0e-237 827.0 663 59.9
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 3.3e-228 795.4 662 57.3
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-220 767.3 662 55.1
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.1e-212 743.8 523 68.3
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 5.9e-153 545.4 595 50.6
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.1e-130 471.5 715 40.0
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 4.6e-105 386.3 279 62.7
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.7e-96 355.5 264 64.8
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.5e-91 339.0 289 61.9
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 7.2e-82 309.3 200 71.5
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 4.4e-79 300.1 226 65.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.2e-76 292.0 261 59.0
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 5.3e-61 240.0 148 76.4
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 7.2e-50 203.0 122 77.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.7e-46 191.8 138 65.2
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.7e-46 191.8 127 66.9
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.5e-26 125.6 92 63.0
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.3e-26 124.0 157 46.5
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.4e-24 119.0 107 53.3
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 7.3e-18 96.7 62 75.8
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 2.4e-16 91.7 110 50.9
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 6.8e-16 90.1 56 78.6
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.1e-12 78.6 43 76.7
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.1e-09 68.6 41 78.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 3.1e-08 64.7 70 52.9


User provided reference genes

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