Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 9.5e-109 396.7 185 100.0
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 9.6e-53 210.7 100 90.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 1.6e-52 209.9 101 88.1
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 2.1e-52 209.5 102 88.2
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 2.1e-52 209.5 103 87.4
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 6.3e-52 208.0 101 86.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 8.2e-52 207.6 100 89.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.4e-51 206.8 100 87.0
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 1.4e-51 206.8 100 90.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.8e-51 206.5 100 87.0
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 2.4e-51 206.1 101 87.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 3.1e-51 205.7 101 87.1
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 3.1e-51 205.7 100 88.0
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 4.1e-51 205.3 115 80.0
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 5.3e-51 204.9 100 89.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-50 203.8 100 89.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 2.0e-50 203.0 100 89.0
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-50 202.6 96 91.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 4.5e-50 201.8 99 86.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.9e-50 201.4 101 85.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 5.9e-50 201.4 100 86.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 7.6e-50 201.1 101 84.2
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 7.6e-50 201.1 115 75.7
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 7.6e-50 201.1 100 87.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 7.6e-50 201.1 104 84.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.0e-49 200.7 100 84.0
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.7e-49 199.9 124 72.6
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.2e-49 199.5 100 88.0
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.2e-49 199.5 101 84.2
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 2.2e-49 199.5 101 85.1
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 2.2e-49 199.5 101 85.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 2.2e-49 199.5 101 85.1
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.2e-49 199.5 101 83.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 2.9e-49 199.1 100 85.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 2.9e-49 199.1 100 86.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 3.8e-49 198.7 100 86.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 3.8e-49 198.7 102 84.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 3.8e-49 198.7 101 85.1
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 3.8e-49 198.7 104 82.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.8e-49 198.7 97 88.7
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.0e-49 198.4 98 85.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.0e-49 198.4 101 83.2
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 5.0e-49 198.4 97 89.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.0e-49 198.4 104 82.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.0e-49 198.4 104 82.7
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.0e-49 198.4 100 84.0
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 6.5e-49 198.0 104 82.7
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 6.5e-49 198.0 104 82.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 1.1e-48 197.2 100 86.0
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.9e-48 196.4 101 83.2
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.9e-48 196.4 101 82.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.9e-48 196.4 101 82.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.9e-48 196.4 100 84.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.9e-48 196.4 100 84.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.5e-48 196.1 100 82.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 2.5e-48 196.1 96 87.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 3.2e-48 195.7 100 83.0
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 3.2e-48 195.7 117 74.4
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 4.2e-48 195.3 100 84.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 7.2e-48 194.5 96 88.5
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 7.2e-48 194.5 100 82.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 7.2e-48 194.5 100 82.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 7.2e-48 194.5 102 80.4
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 7.2e-48 194.5 101 82.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 7.2e-48 194.5 102 85.3
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 9.3e-48 194.1 100 84.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 9.3e-48 194.1 116 73.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.2e-47 193.7 100 82.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.2e-47 193.7 102 81.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.6e-47 193.4 100 83.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.6e-47 193.4 112 75.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.6e-47 193.4 117 74.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 1.6e-47 193.4 101 82.2
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.1e-47 193.0 96 86.5
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 2.7e-47 192.6 100 82.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 2.7e-47 192.6 117 72.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.7e-47 192.6 112 75.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 3.6e-47 192.2 117 76.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 3.6e-47 192.2 104 79.8
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 4.6e-47 191.8 109 77.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 4.6e-47 191.8 109 77.1
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 4.6e-47 191.8 102 85.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.6e-47 191.8 102 85.3
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.6e-47 191.8 102 85.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.6e-47 191.8 102 85.3
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 4.6e-47 191.8 116 74.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.6e-47 191.8 99 82.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 6.1e-47 191.4 116 75.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.9e-47 191.0 116 72.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 7.9e-47 191.0 99 81.8
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 7.9e-47 191.0 116 74.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.0e-46 190.7 101 78.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.8e-46 189.9 99 81.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 1.8e-46 189.9 101 82.2
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-46 189.9 100 82.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-46 189.9 100 82.0
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 2.3e-46 189.5 101 83.2
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.0e-46 189.1 123 69.1
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 3.0e-46 189.1 107 77.6
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.1e-46 188.3 101 77.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.7e-46 188.0 101 78.2
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 6.7e-46 188.0 98 82.7
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-45 187.2 94 85.1
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.9e-45 186.4 101 77.2
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.5e-45 186.0 117 70.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 2.5e-45 186.0 91 87.9
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 2.5e-45 186.0 123 70.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.5e-45 186.0 99 79.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 5.7e-45 184.9 92 85.9
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 5.7e-45 184.9 99 79.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 9.7e-45 184.1 117 70.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.3e-44 183.7 99 75.8
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-44 183.7 113 72.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-44 183.3 102 75.5
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.6e-44 183.3 101 77.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.2e-44 183.0 100 81.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.2e-44 183.0 117 68.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.8e-44 182.6 100 77.0
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.8e-44 182.6 98 79.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.7e-44 182.2 101 75.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-44 182.2 101 75.2
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.7e-44 182.2 101 75.2
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.8e-44 181.8 111 74.8
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-43 179.9 117 67.5
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.9e-43 177.9 107 72.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-42 177.2 114 71.1
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-41 173.7 101 73.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.8e-41 172.2 103 77.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.2e-39 167.2 97 75.3
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.6e-39 166.8 100 68.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.7e-39 166.0 132 57.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 8.8e-38 161.0 96 72.9
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.4e-37 158.7 94 73.4
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.2e-33 146.4 89 70.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.8e-33 145.6 91 70.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-32 142.1 91 71.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.1e-31 139.8 100 64.0
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 8.8e-30 134.4 100 64.0
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.7e-28 130.2 93 61.3
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.2e-26 124.0 119 54.6
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 9.4e-24 114.4 92 60.9
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.7e-13 78.6 37 86.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.3e-12 77.4 36 88.9
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.2e-12 76.6 52 71.2


User provided reference genes

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