Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 1.5e-283 978.8 478 100.0
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 1.4e-167 593.6 452 66.6
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.4e-164 583.6 452 65.7
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 1.6e-163 580.1 452 65.5
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 1.6e-163 580.1 452 65.5
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 3.9e-162 575.5 454 64.1
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 6.6e-162 574.7 452 65.3
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 2.5e-161 572.8 452 65.3
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 2.1e-160 569.7 452 64.6
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 6.2e-160 568.2 448 63.2
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 8.0e-160 567.8 453 64.9
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.0e-159 567.4 453 63.4
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.2e-158 563.9 453 63.1
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 2.6e-158 562.8 453 62.5
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 2.4e-156 556.2 453 63.1
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 3.0e-154 549.3 452 61.9
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 3.3e-153 545.8 453 62.3
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 1.6e-152 543.5 453 61.4
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 8.1e-152 541.2 451 63.2
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 8.9e-151 537.7 450 61.3
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 1.2e-150 537.3 453 61.6
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 2.6e-150 536.2 453 60.5
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.6e-150 536.2 453 60.7
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 7.5e-150 534.6 421 65.3
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 1.3e-149 533.9 454 61.0
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 2.9e-149 532.7 452 60.2
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 3.7e-149 532.3 453 60.3
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 4.1e-148 528.9 450 60.7
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.4e-148 528.5 453 61.1
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 5.4e-148 528.5 451 57.6
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 7.1e-148 528.1 454 59.9
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 1.6e-147 526.9 453 60.9
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 2.3e-146 523.1 453 60.3
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 6.6e-146 521.5 453 59.2
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 1.9e-145 520.0 454 56.8
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 3.6e-144 515.8 453 58.7
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 4.7e-144 515.4 451 57.6
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 4.7e-144 515.4 458 58.1
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 6.2e-144 515.0 453 59.2
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 1.4e-143 513.8 458 58.1
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 2.3e-143 513.1 453 59.2
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 8.9e-143 511.1 453 58.3
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 1.2e-142 510.8 458 57.6
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 2.6e-142 509.6 451 56.8
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 1.3e-141 507.3 451 55.9
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 1.3e-141 507.3 455 59.1
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.7e-141 506.9 451 57.4
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.1e-140 504.2 455 58.2
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 9.2e-140 501.1 453 57.8
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.2e-139 500.7 458 57.2
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 4.6e-139 498.8 451 56.1
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 6.0e-139 498.4 451 56.1
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 7.8e-139 498.0 451 56.1
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.0e-138 497.7 455 56.7
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 1.3e-138 497.3 451 55.4
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 1.3e-138 497.3 451 56.5
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 1.7e-138 496.9 455 57.4
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 3.0e-138 496.1 451 55.2
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 3.0e-138 496.1 454 57.5
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 3.9e-138 495.7 453 55.0
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.5e-137 493.8 458 56.1
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 2.5e-137 493.0 447 56.8
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 2.5e-137 493.0 455 57.6
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 3.3e-137 492.7 451 55.7
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 3.3e-137 492.7 455 56.3
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.6e-136 490.3 445 56.4
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 3.6e-136 489.2 455 55.8
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 4.7e-136 488.8 471 56.3
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 6.2e-136 488.4 451 56.1
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 8.1e-136 488.0 452 54.9
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 1.4e-135 487.3 451 54.5
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 1.4e-135 487.3 451 55.9
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.4e-135 487.3 450 55.6
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.4e-135 487.3 452 55.5
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 1.8e-135 486.9 458 57.2
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.4e-135 486.5 426 58.9
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 4.0e-135 485.7 455 56.5
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 5.2e-135 485.3 448 56.5
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 8.9e-135 484.6 457 55.8
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.4e-134 482.6 453 55.6
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 2.9e-133 479.6 451 54.3
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 3.8e-133 479.2 452 54.4
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.1e-132 477.6 452 54.4
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 1.4e-132 477.2 455 56.7
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 5.4e-132 475.3 453 55.0
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 9.3e-132 474.6 457 56.5
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.6e-131 473.8 458 54.4
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 2.1e-131 473.4 451 53.4
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 2.7e-131 473.0 434 55.5
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.3e-130 470.7 436 55.0
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 5.6e-129 465.3 451 52.8
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 5.6e-129 465.3 449 56.6
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 8.1e-128 461.5 451 52.8
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.4e-127 460.7 461 53.1
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.4e-127 459.9 484 51.4
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 3.1e-127 459.5 451 54.1
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 4.0e-127 459.1 421 55.8
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 2.4e-124 449.9 430 53.7
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 7.1e-124 448.4 474 50.4
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 9.3e-124 448.0 443 54.2
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 1.0e-122 444.5 450 53.6
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 2.3e-122 443.4 435 52.2
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 3.0e-122 443.0 446 53.6
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 5.1e-122 442.2 452 52.9
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 1.3e-120 437.6 471 49.3
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 1.7e-117 427.2 449 51.4
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 8.4e-117 424.9 453 51.0
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 3.3e-113 412.9 423 52.2
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 4.3e-113 412.5 450 50.2
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 4.3e-113 412.5 430 50.9
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 4.0e-111 406.0 441 46.5
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 4.0e-111 406.0 448 51.8
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 5.3e-111 405.6 453 48.1
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 1.4e-108 397.5 451 48.8
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 7.4e-105 385.2 292 63.7
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 3.2e-84 316.6 260 57.3
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 7.2e-84 315.5 307 53.7
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 4.7e-83 312.8 469 38.6
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 2.6e-81 307.0 260 55.8
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 5.7e-81 305.8 450 38.7
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 9.7e-81 305.1 265 57.0
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 9.7e-81 305.1 265 57.0
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 2.3e-74 283.9 424 42.9
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 7.5e-73 278.9 429 42.0
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.4e-66 258.1 420 36.2
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 1.8e-63 247.7 186 63.4
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 2.9e-61 240.4 495 29.3
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 3.6e-59 233.4 164 65.9
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 5.0e-53 213.0 191 52.4
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 8.0e-51 205.7 240 49.2
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 3.0e-50 203.8 207 47.8
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 2.9e-48 197.2 186 56.5
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 4.0e-42 176.8 187 50.3
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 1.8e-26 124.8 142 50.7
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 1.3e-21 108.6 161 37.9
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 4.3e-20 103.6 79 60.8
FAN17G1117 Fragaria x ananassa HOM05D004718 ORTHO05D046641 7.8e-14 82.8 101 43.6
Os03g0192900 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 7.3e-12 76.3 84 50.0
COL.COLO4_16463 Corchorus olitorius HOM05D004718 ORTHO05D155331 6.4e-08 63.2 36 75.0
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 2.4e-07 61.2 129 27.9


User provided reference genes

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