Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.5 Carica papaya HOM05D001292 ORTHO05D001202 1.8e-50 202.2 97 100.0
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 2.9e-16 88.6 66 57.6
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 4.2e-15 84.7 58 58.6
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 1.6e-14 82.8 69 50.7
Phvul.006G202100 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 2.1e-14 82.4 69 49.3
Glyma.13G256800 Glycine max HOM05D001292 ORTHO05D001202 2.7e-14 82.0 69 53.6
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 3.5e-14 81.6 66 57.6
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 6.0e-14 80.9 66 60.6
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 6.0e-14 80.9 66 59.1
CSS0039925 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 7.9e-14 80.5 72 54.2
CSS0046510 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 7.9e-14 80.5 72 54.2
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 7.9e-14 80.5 69 53.6
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 5.1e-13 77.8 68 52.9
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 5.1e-13 77.8 66 50.0
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.7e-13 77.4 70 51.4
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.9e-12 75.9 65 55.4
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 2.5e-12 75.5 70 50.0
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 2.5e-12 75.5 65 53.8
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 2.5e-12 75.5 67 53.7
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 7.4e-12 73.9 67 52.2
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 9.7e-12 73.6 67 50.7
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 9.7e-12 73.6 73 50.7
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.3e-11 73.2 70 48.6
Medtr2g009580 Medicago truncatula HOM05D001292 ORTHO05D001202 1.3e-11 73.2 80 43.8
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 2.2e-11 72.4 68 47.1
Lj5A230G43 Lonicera japonica HOM05D001292 ORTHO05D001202 2.8e-11 72.0 73 49.3
arahy.Tifrunner.gnm1.ann1.31UHS4 Arachis hypogaea HOM05D001292 ORTHO05D001202 4.8e-11 71.2 68 51.5
arahy.Tifrunner.gnm1.ann1.Y95VYD Arachis hypogaea HOM05D001292 ORTHO05D001202 4.8e-11 71.2 68 51.5
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 4.8e-11 71.2 64 46.9
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 4.8e-11 71.2 74 43.2
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 4.8e-11 71.2 64 46.9
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 4.8e-11 71.2 64 46.9
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 4.8e-11 71.2 74 43.2
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 4.8e-11 71.2 68 47.1
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 4.8e-11 71.2 64 50.0
Sp7g31340 Schrenkiella parvula HOM05D001292 ORTHO05D001202 8.2e-11 70.5 66 45.5
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 1.4e-10 69.7 70 45.7
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 2.4e-10 68.9 64 46.9
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 3.1e-10 68.6 74 40.5
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.1e-10 68.6 69 50.7
AL7G17890 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 4.1e-10 68.2 64 45.3
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.1e-10 68.2 72 44.4
THA.LOC104807180 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 4.1e-10 68.2 66 47.0
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 5.3e-10 67.8 72 44.4
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 5.3e-10 67.8 72 44.4
Aqoxy6G00877 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 6.9e-10 67.4 69 46.4
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 9.0e-10 67.0 66 50.0
Thhalv10024447m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 1.2e-09 66.6 66 40.9
AT4G33620 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.5e-09 66.2 63 44.4
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 2.0e-09 65.9 63 49.2
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 2.6e-09 65.5 63 44.4
Sopen01g048280 Solanum pennellii HOM05D001292 ORTHO05D001202 2.6e-09 65.5 65 55.4
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 4.5e-09 64.7 64 45.3
Cc02_g20940 Coffea canephora HOM05D001292 ORTHO05D001202 5.9e-09 64.3 64 48.4
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 1.0e-08 63.5 67 38.8
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.0e-08 63.5 58 48.3
PSO541G4975 Papaver somniferum HOM05D001292 ORTHO05D001202 1.3e-08 63.2 64 42.2
Lsat_1_v5_gn_6_105041 Lactuca sativa HOM05D001292 ORTHO05D001202 1.7e-08 62.8 64 45.3
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 1.7e-08 62.8 63 50.8
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 2.2e-08 62.4 65 49.2
PSO675G2554 Papaver somniferum HOM05D001292 ORTHO05D001202 2.2e-08 62.4 64 42.2
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 2.2e-08 62.4 63 42.9
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 2.9e-08 62.0 67 41.8
Sabra07G0094200 Salix brachista HOM05D001292 ORTHO05D001202 2.9e-08 62.0 63 47.6
CAN.G523.11 Capsicum annuum HOM05D001292 ORTHO05D001202 3.8e-08 61.6 58 56.9
Cfa013791 Carpinus fangiana HOM05D001292 ORTHO05D001202 8.5e-08 60.5 62 37.1
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 8.5e-08 60.5 66 39.4
GSVIVG01009172001 Vitis vinifera HOM05D001292 ORTHO05D001202 1.1e-07 60.1 64 40.6
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 3.2e-07 58.5 56 44.6
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 4.2e-07 58.2 66 39.4
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 5.5e-07 57.8 66 39.4
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 7.2e-07 57.4 66 37.9
vmacro04654 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 7.2e-07 57.4 58 41.4
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 9.3e-07 57.0 67 37.3
ECA246G3273 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.2e-06 56.6 62 40.3
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.6e-06 56.2 74 35.1
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 1.6e-06 56.2 59 40.7
Peaxi162Scf00299g00720 Petunia axillaris HOM05D001292 ORTHO05D001202 1.6e-06 56.2 59 49.2
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 2.1e-06 55.8 66 37.9
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 2.7e-06 55.5 59 40.7
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 2.7e-06 55.5 56 42.9
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 2.7e-06 55.5 66 43.9
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 3.6e-06 55.1 57 36.8
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 3.6e-06 55.1 64 42.2


User provided reference genes

Program Settings