Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 655 100.0
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 3.6e-235 818.5 646 68.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 8.0e-235 817.4 638 68.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 2.3e-234 815.8 643 68.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 1.2e-233 813.5 638 68.7
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 2.2e-232 809.3 638 67.9
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 3.1e-231 805.4 640 67.7
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 4.1e-231 805.1 654 66.5
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 7.7e-230 800.8 644 66.8
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 6.5e-229 797.7 641 67.6
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 2.7e-227 792.3 639 69.2
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 4.4e-225 785.0 662 67.2
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 9.8e-225 783.9 642 67.1
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.8e-223 779.6 686 63.0
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 2.4e-223 779.2 639 67.6
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 3.1e-223 778.9 645 67.3
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 1.6e-222 776.5 639 64.5
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 2.5e-220 769.2 649 65.5
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 3.3e-220 768.8 644 67.1
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 2.1e-219 766.1 641 65.2
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 8.9e-218 760.8 641 64.1
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 2.4e-215 752.7 618 71.2
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 4.1e-215 751.9 627 67.5
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 1.7e-213 746.5 627 69.1
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 2.9e-213 745.7 644 66.3
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 2.6e-209 732.6 648 62.2
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 2.6e-209 732.6 617 64.2
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 5.8e-209 731.5 643 68.1
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 2.6e-201 706.1 640 60.9
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 3.7e-200 702.2 647 65.4
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 1.3e-197 693.7 633 64.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 6.6e-197 691.4 633 64.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 3.3e-196 689.1 639 58.8
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 1.2e-195 687.2 629 60.6
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 1.6e-195 686.8 609 62.7
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.3e-194 682.9 632 59.7
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 4.0e-194 682.2 613 61.8
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 3.4e-193 679.1 641 64.6
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 3.4e-193 679.1 628 60.7
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 4.4e-193 678.7 657 58.8
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.9e-193 677.6 635 59.2
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 1.3e-192 677.2 637 63.6
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 2.2e-192 676.4 639 58.1
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.2e-192 676.4 639 58.7
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 1.9e-191 673.3 611 64.0
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 7.1e-191 671.4 642 58.6
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 9.2e-191 671.0 640 59.4
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.2e-190 670.6 655 58.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 2.7e-190 669.5 612 60.8
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 3.9e-189 665.6 643 58.6
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 6.6e-189 664.8 614 63.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 8.6e-189 664.5 661 57.9
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 2.8e-187 659.4 629 62.2
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 4.7e-187 658.7 639 57.3
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.4e-186 657.1 642 56.9
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 2.4e-186 656.4 649 57.8
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 2.4e-186 656.4 605 65.1
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 1.2e-185 654.1 615 59.2
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 3.4e-185 652.5 642 56.1
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 9.9e-185 651.0 643 56.8
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.3e-184 650.6 642 55.9
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 1.3e-184 650.6 642 56.1
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 1.7e-184 650.2 642 60.0
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 4.9e-184 648.7 648 56.0
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 6.4e-184 648.3 611 58.8
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 8.4e-184 647.9 652 56.4
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 2.4e-183 646.4 648 55.9
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 3.2e-183 646.0 644 56.7
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.2e-182 644.0 612 63.1
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 1.3e-181 640.6 647 55.6
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 1.3e-181 640.6 647 55.6
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 1.3e-181 640.6 647 55.6
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.3e-181 640.6 642 62.1
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 1.3e-181 640.6 639 56.3
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 2.3e-181 639.8 631 57.8
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.9e-181 639.0 638 55.3
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 5.1e-181 638.6 638 55.3
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.7e-181 637.9 480 74.8
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 1.5e-180 637.1 642 55.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 4.3e-180 635.6 638 55.5
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 4.8e-179 632.1 634 55.7
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.1e-178 630.9 638 54.7
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 3.1e-178 629.4 639 57.1
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.2e-177 627.5 624 55.6
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-177 627.1 493 73.2
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 3.4e-177 625.9 649 55.9
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.7e-176 623.6 638 54.5
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 8.4e-176 621.3 636 61.6
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.4e-175 620.5 658 53.8
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.9e-175 620.2 639 54.3
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 1.9e-175 620.2 611 61.2
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 7.1e-175 618.2 639 57.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 7.1e-175 618.2 618 55.8
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 5.1e-173 612.1 642 53.4
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 7.4e-172 608.2 643 58.2
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 8.4e-168 594.7 662 56.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.4e-167 594.0 636 54.1
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.7e-166 589.7 631 55.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.0e-161 573.5 642 51.4
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 4.9e-160 568.9 482 60.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 3.3e-140 503.1 528 60.8
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.5e-135 486.9 1243 31.7
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 6.7e-133 478.8 358 70.7
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.6e-132 476.9 668 42.1
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 4.2e-119 433.0 358 63.1
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 3.0e-117 426.8 1041 32.4
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.2e-111 406.8 343 63.0
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.8e-101 372.5 417 48.7
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 1.1e-90 338.6 562 37.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 5.8e-84 316.2 583 36.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 3.2e-82 310.5 534 34.3
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 5.1e-80 303.1 439 40.1
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.9e-67 260.8 326 45.1
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.9e-61 239.6 351 44.7
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.4e-50 205.3 519 31.0
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.7e-43 181.8 194 57.2
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.9e-37 159.8 200 50.0
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 4.2e-34 150.6 192 47.9
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.2e-30 138.3 295 34.9
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 2.6e-28 131.3 498 31.5
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-26 124.8 120 58.3
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.3e-24 118.2 140 50.7
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-23 115.9 90 64.4
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 4.8e-22 110.5 373 26.5
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.2e-18 97.4 110 53.6
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 7.2e-18 96.7 251 30.7
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.6e-17 95.5 307 29.6
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.4e-08 65.9 44 70.5


User provided reference genes

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