Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 0.0e+00 1131.7 550 100.0
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.8e-280 968.8 569 81.7
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 2.2e-278 961.8 567 82.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.6e-276 955.7 558 81.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 3.5e-276 954.5 569 80.3
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 4.6e-276 954.1 558 81.4
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.9e-275 951.0 551 82.4
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.9e-275 951.0 555 81.3
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.6e-275 950.3 569 81.0
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.6e-275 949.9 550 82.4
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-274 948.3 569 80.8
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.3e-274 948.0 550 82.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.3e-274 948.0 555 81.3
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 4.3e-274 947.6 550 82.0
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 4.3e-274 947.6 551 82.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 5.6e-274 947.2 569 80.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 7.3e-274 946.8 569 80.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.2e-273 946.0 549 81.8
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-273 945.3 569 80.8
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.1e-273 945.3 570 79.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.8e-273 944.9 556 81.7
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.6e-273 944.5 552 81.9
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-272 943.0 569 80.7
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.1e-272 943.0 551 82.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.4e-272 942.6 569 80.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.1e-272 941.4 550 81.6
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 4.0e-272 941.0 564 80.5
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 6.9e-272 940.3 569 80.3
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 6.9e-272 940.3 551 81.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 8.9e-272 939.9 564 80.3
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.0e-271 938.7 558 79.9
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.4e-271 937.9 564 80.3
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.4e-271 937.9 559 79.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.3e-270 936.0 549 81.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.7e-270 935.6 554 80.1
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.2e-270 935.3 558 81.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.2e-270 935.3 552 81.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 4.9e-270 934.1 549 81.1
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.9e-270 934.1 542 82.1
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 8.4e-270 933.3 569 79.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.4e-269 931.8 563 79.0
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.2e-269 931.4 569 78.0
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.4e-269 930.6 559 78.9
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 7.1e-269 930.2 549 81.1
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.3e-269 929.9 569 77.7
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.3e-269 929.9 559 79.4
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.2e-268 929.5 569 78.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.5e-268 927.9 561 79.5
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.6e-268 927.5 569 77.9
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 4.6e-268 927.5 571 79.0
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 6.0e-268 927.2 569 77.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.8e-268 926.8 559 79.2
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.0e-267 926.4 569 77.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.3e-267 925.2 555 79.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 8.7e-267 923.3 569 78.9
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.3e-266 921.4 557 79.9
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.3e-266 921.4 569 77.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 4.3e-266 921.0 569 77.7
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 4.3e-266 921.0 588 76.2
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 7.3e-266 920.2 549 80.1
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.6e-265 919.1 559 79.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.1e-265 918.7 569 77.9
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 4.8e-265 917.5 549 80.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 8.1e-265 916.8 548 79.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.1e-264 916.4 553 78.5
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.1e-264 916.4 557 79.5
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.1e-264 916.4 593 75.4
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 1.8e-264 915.6 543 80.3
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 3.1e-264 914.8 561 77.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 9.0e-264 913.3 563 78.5
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-263 912.5 572 78.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 2.0e-263 912.1 569 76.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.0e-263 912.1 549 79.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.3e-262 909.4 558 78.5
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 2.9e-262 908.3 542 79.9
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.8e-262 907.9 548 79.6
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.6e-260 902.5 577 75.4
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.3e-259 899.4 548 78.8
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 4.3e-258 894.4 549 77.6
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.3e-258 894.4 545 78.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.6e-257 892.5 569 75.2
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 3.7e-257 891.3 562 75.4
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.9e-256 887.1 549 77.6
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.6e-255 885.2 561 75.4
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-255 884.8 549 77.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.2e-254 882.1 561 75.2
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.2e-252 876.3 563 74.4
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.5e-252 874.8 549 76.1
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 8.7e-251 870.2 520 80.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.1e-249 865.5 569 75.2
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.1e-249 865.5 545 77.8
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.2e-249 864.0 563 73.4
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 9.0e-248 860.1 543 76.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-247 859.8 554 75.1
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.4e-247 858.2 542 76.6
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.1e-243 844.3 569 73.3
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.4e-240 836.3 543 72.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.0e-238 827.8 569 72.6
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.7e-235 817.0 549 71.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 4.3e-234 814.7 566 71.0
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 4.8e-233 811.2 573 69.1
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.2e-228 796.6 494 77.3
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.6e-228 794.7 543 70.9
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.4e-226 788.1 539 70.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-226 787.3 539 70.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.8e-224 782.7 556 70.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 5.3e-224 781.2 562 70.6
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 5.0e-222 774.6 547 69.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 7.2e-221 770.8 455 82.4
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.0e-219 766.9 558 67.4
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.5e-215 751.9 506 72.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 2.2e-214 749.2 552 68.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.0e-211 740.3 549 67.0
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 3.2e-205 718.8 424 81.6
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 4.2e-205 718.4 542 65.1
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 4.2e-205 718.4 423 82.3
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 7.5e-202 707.6 536 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.0e-195 687.2 532 63.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 5.7e-194 681.4 547 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-188 663.3 537 60.7
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.9e-185 651.7 537 61.5
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.9e-185 651.7 537 61.5
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 7.0e-184 647.9 611 58.3
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.3e-149 531.6 330 79.1
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.8e-147 526.9 334 76.3
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.6e-143 512.3 549 54.5
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.3e-133 479.2 279 79.9
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-129 467.6 292 78.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.9e-128 463.8 554 45.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.8e-118 428.3 309 70.2
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 4.2e-104 382.9 332 60.8
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-85 320.1 483 42.7
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.1e-83 313.5 199 77.4
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 8.9e-70 268.9 206 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.1e-63 247.7 333 42.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.3e-62 244.2 133 87.2
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 3.5e-58 230.3 139 78.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.2e-53 215.3 129 77.5
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.8e-53 213.0 137 73.0
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.1e-50 204.5 127 74.8
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.1e-50 204.5 127 74.8
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 3.0e-49 200.7 109 78.0
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.1e-49 199.9 131 74.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.5e-48 197.6 131 71.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.6e-47 194.9 120 74.2
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.6e-47 194.9 120 74.2
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.2e-45 188.7 119 73.1
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.2e-45 188.7 119 73.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 3.9e-41 173.7 95 80.0
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 6.9e-30 136.3 79 81.0
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.9e-30 136.3 119 60.5
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.8e-25 121.7 118 50.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.8e-23 114.4 121 51.2
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-22 112.1 86 62.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.4e-19 102.1 62 74.2
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 6.0e-18 96.7 63 73.0
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.3e-16 90.5 76 59.2
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 6.2e-15 86.7 116 49.1


User provided reference genes

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