Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 6.5e-148 527.3 258 100.0
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 3.4e-80 302.4 164 87.8
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 1.3e-79 300.4 164 86.0
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 3.8e-79 298.9 164 84.1
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 8.4e-79 297.7 163 85.9
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 1.1e-78 297.4 164 84.8
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 1.4e-78 297.0 164 84.1
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 1.9e-78 296.6 164 86.0
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 3.2e-78 295.8 164 84.1
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 5.4e-78 295.0 164 85.4
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 1.2e-77 293.9 164 82.3
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 2.7e-77 292.7 164 82.3
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 6.0e-77 291.6 164 82.3
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 6.0e-77 291.6 164 82.3
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 6.0e-77 291.6 164 82.3
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 1.0e-76 290.8 164 81.7
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 1.0e-76 290.8 164 82.3
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 1.0e-76 290.8 164 84.1
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 1.3e-76 290.4 164 82.9
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 1.7e-76 290.0 169 80.5
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 3.0e-76 289.3 164 82.3
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 3.0e-76 289.3 164 82.3
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 3.9e-76 288.9 164 82.3
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 8.7e-76 287.7 164 82.3
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 8.7e-76 287.7 164 82.3
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 8.7e-76 287.7 164 79.9
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 80.5
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 80.5
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 83.5
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 79.9
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 81.7
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 1.5e-75 287.0 164 81.1
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 3.3e-75 285.8 164 82.3
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 5.6e-75 285.0 160 84.4
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 5.6e-75 285.0 164 82.3
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 7.3e-75 284.6 164 80.5
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 1.3e-74 283.9 164 81.1
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 1.6e-74 283.5 164 77.4
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 1.6e-74 283.5 164 80.5
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 2.1e-74 283.1 164 80.5
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 2.1e-74 283.1 164 80.5
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 8.1e-74 281.2 164 78.0
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 8.1e-74 281.2 164 78.7
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 8.1e-74 281.2 164 80.5
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 8.1e-74 281.2 164 80.5
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 3.1e-73 279.3 164 78.0
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 5.3e-73 278.5 191 71.2
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 6.9e-73 278.1 164 78.0
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 6.9e-73 278.1 164 78.0
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 1.5e-72 276.9 164 77.4
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 3.4e-72 275.8 164 78.0
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 5.8e-72 275.0 164 76.8
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 5.8e-72 275.0 164 78.7
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 5.8e-72 275.0 164 78.0
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 5.8e-72 275.0 164 78.0
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 9.9e-72 274.2 164 79.3
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 1.3e-71 273.9 164 76.2
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 2.2e-71 273.1 168 75.0
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 2.2e-71 273.1 166 77.7
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 2.9e-71 272.7 164 78.7
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 6.4e-71 271.6 164 77.4
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 8.4e-71 271.2 164 75.0
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 1.4e-70 270.4 164 77.4
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 1.4e-70 270.4 164 77.4
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 1.4e-70 270.4 164 76.2
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 3.2e-70 269.2 164 76.8
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 7.1e-70 268.1 164 76.2
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 1.6e-69 266.9 164 76.2
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 2.7e-69 266.2 166 75.9
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 3.5e-69 265.8 165 77.0
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 3.5e-69 265.8 164 76.8
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 3.5e-69 265.8 164 77.4
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 7.9e-69 264.6 166 76.5
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 7.9e-69 264.6 164 75.0
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 1.0e-68 264.2 166 76.5
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.7e-68 263.5 160 78.1
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 1.7e-68 263.5 164 74.4
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 2.3e-68 263.1 164 73.8
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 2.3e-68 263.1 164 76.2
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 6.6e-68 261.5 165 75.8
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 6.6e-68 261.5 164 75.6
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 6.6e-68 261.5 166 74.1
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 1.5e-67 260.4 166 75.3
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 1.5e-67 260.4 164 75.6
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 1.5e-67 260.4 164 76.2
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 1.5e-67 260.4 164 75.6
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.9e-67 260.0 164 73.8
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 2.5e-67 259.6 166 75.3
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 3.3e-67 259.2 165 75.2
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 7.3e-67 258.1 164 75.0
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 7.3e-67 258.1 193 66.3
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 1.3e-66 257.3 164 73.2
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 2.1e-66 256.5 164 73.8
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 3.6e-66 255.8 164 72.6
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 4.8e-66 255.4 257 53.3
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 1.4e-65 253.8 164 72.0
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 5.3e-65 251.9 164 73.8
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 2.0e-64 250.0 164 70.1
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 2.0e-64 250.0 164 72.0
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 6.4e-63 245.0 165 73.3
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.1e-62 244.2 163 71.8
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 4.6e-61 238.8 164 66.5
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 3.9e-60 235.7 210 57.6
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 3.9e-60 235.7 186 62.9
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 1.2e-56 224.2 122 83.6
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.2e-55 219.9 178 62.4
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.7e-53 213.0 175 59.4
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 3.5e-53 212.6 128 75.0
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 3.9e-52 209.1 122 82.0
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 8.7e-52 208.0 167 62.9
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 5.7e-51 205.3 129 72.9
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.8e-49 200.3 167 58.7
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.1e-49 199.1 168 60.1
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 5.3e-49 198.7 167 61.7
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 4.5e-48 195.7 164 59.1
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.9e-43 180.3 95 89.5
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 9.0e-41 171.4 164 53.7
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 1.3e-39 167.5 170 52.9
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.2e-39 166.8 167 53.3
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 7.2e-38 161.8 168 53.0
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 9.4e-30 134.8 179 45.8
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 7.0e-25 118.6 256 32.4
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 2.0e-24 117.1 197 41.1
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 7.7e-24 115.2 62 82.3
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 3.7e-18 96.3 75 66.7
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 1.8e-17 94.0 56 75.0
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 9.4e-14 81.6 41 95.1
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.4e-12 77.8 55 65.5
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 1.4e-12 77.8 41 92.7
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 1.4e-12 77.8 41 92.7
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 1.4e-09 67.8 42 76.2
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 1.8e-09 67.4 38 84.2
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 5.4e-09 65.9 43 69.8
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.4e-09 65.9 43 69.8
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.8e-07 59.7 51 52.9
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 8.5e-07 58.5 75 41.3


User provided reference genes

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