Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 5.5e-167 590.9 297 100.0
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 4.5e-137 491.5 303 81.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 5.9e-137 491.1 303 82.2
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.1e-135 486.9 304 80.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.5e-135 486.5 304 82.2
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.5e-135 485.7 304 80.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.3e-135 485.3 304 80.9
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.6e-135 484.6 304 81.9
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.2e-134 483.4 304 81.9
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.1e-134 482.6 303 79.9
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.1e-134 482.6 305 80.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 6.1e-134 481.1 305 80.7
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 8.0e-134 480.7 303 80.5
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.4e-133 479.9 306 80.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.4e-133 479.9 307 82.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 3.0e-133 478.8 325 75.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 8.9e-133 477.2 303 78.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 4.9e-131 471.5 304 78.6
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 4.1e-130 468.4 302 76.8
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.4e-130 468.0 278 82.7
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 5.4e-130 468.0 303 77.6
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.6e-129 466.5 302 76.5
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 6.0e-129 464.5 305 75.4
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 7.8e-129 464.2 304 76.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.0e-128 463.8 302 76.5
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.3e-128 462.6 268 86.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.9e-128 461.8 303 76.6
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 6.6e-128 461.1 303 75.9
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.6e-128 461.1 303 76.2
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.9e-127 459.5 293 77.1
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.9e-127 459.5 310 76.8
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 7.3e-127 457.6 322 74.5
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 2.1e-126 456.1 305 74.4
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 3.6e-126 455.3 304 74.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 4.7e-126 454.9 305 76.1
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 4.7e-126 454.9 306 75.5
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.1e-125 453.8 295 74.9
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.4e-125 453.4 301 74.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.8e-125 453.0 269 84.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.8e-125 453.0 304 75.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 3.1e-125 452.2 304 75.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 4.0e-125 451.8 302 75.8
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 5.2e-125 451.4 302 75.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.5e-124 449.9 300 74.0
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.6e-124 449.1 276 81.5
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.4e-124 448.7 308 71.4
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.8e-124 448.0 302 73.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 5.8e-124 448.0 302 73.5
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 7.5e-124 447.6 300 75.3
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 7.5e-124 447.6 306 73.5
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.3e-123 446.8 297 73.1
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.2e-123 446.0 305 75.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.9e-123 445.7 312 71.8
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 3.7e-123 445.3 278 78.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 4.9e-123 444.9 315 72.7
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 6.4e-123 444.5 342 69.6
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 6.4e-123 444.5 302 74.8
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 8.3e-123 444.1 297 73.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.1e-122 443.7 301 73.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.4e-122 442.6 304 73.4
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.4e-122 442.6 278 78.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.4e-122 442.6 358 67.0
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.2e-122 442.2 301 73.1
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.2e-122 442.2 265 81.5
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.2e-122 442.2 276 83.7
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 5.4e-122 441.4 296 72.3
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 9.2e-122 440.7 274 77.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.6e-121 439.9 306 73.9
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.1e-121 439.5 298 72.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 4.6e-121 438.3 306 73.5
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.3e-120 436.8 301 73.4
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 3.0e-120 435.6 307 71.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.5e-119 433.3 274 79.2
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.3e-119 432.2 301 72.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.3e-119 431.8 303 72.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.6e-119 431.4 272 76.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-118 429.9 301 71.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.8e-118 429.1 277 76.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 3.6e-118 428.7 271 81.2
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.0e-116 422.9 317 69.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.4e-116 421.8 288 71.2
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.8e-116 421.4 288 78.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.4e-115 417.9 288 70.1
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-114 416.4 299 71.6
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.9e-114 416.4 325 66.8
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.9e-114 416.4 326 66.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.7e-112 409.8 305 70.5
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 3.0e-112 409.1 300 67.3
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.6e-111 404.8 290 68.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 7.3e-111 404.4 304 68.8
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.1e-110 402.9 325 65.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 8.9e-109 397.5 276 71.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.4e-108 395.6 276 77.9
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 7.6e-108 394.4 259 73.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.8e-102 375.9 255 73.3
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 8.1e-102 374.4 257 73.5
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.4e-101 373.6 256 70.7
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.8e-101 373.2 255 73.3
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.0e-101 372.1 279 64.5
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.9e-101 371.3 281 66.9
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 5.8e-100 368.2 282 65.2
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 9.9e-100 367.5 261 71.3
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.8e-99 365.5 255 72.2
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.2e-98 362.1 264 73.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.5e-95 352.8 267 65.5
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 3.3e-95 352.4 261 68.6
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.2e-94 348.2 249 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.6e-92 341.3 244 68.4
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.1e-90 337.4 217 79.7
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.2e-89 334.0 244 65.2
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.6e-89 333.6 249 69.5
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.9e-87 326.6 257 66.9
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.3e-87 325.9 215 76.7
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.6e-87 324.3 306 61.1
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.8e-86 322.8 267 61.0
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.8e-86 322.0 202 77.7
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.6e-84 316.2 264 60.6
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.4e-84 315.8 217 70.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.3e-79 298.9 243 62.1
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-67 260.0 219 62.1
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.6e-65 252.3 297 49.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.3e-62 244.2 243 54.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 5.3e-61 238.8 276 45.3
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 7.2e-50 201.8 116 80.2
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 9.4e-50 201.4 120 81.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 3.0e-48 196.4 295 40.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.4e-47 191.8 155 64.5
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.8e-46 189.9 262 41.2
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.4e-45 187.6 120 75.8
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-36 156.4 140 59.3
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.7e-35 154.1 88 84.1
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.5e-34 151.0 118 64.4
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 8.8e-32 141.7 83 79.5
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.2e-28 131.3 108 63.9
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.6e-27 125.6 91 69.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.8e-21 107.5 75 69.3
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 3.2e-21 106.7 228 30.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.7e-20 103.6 108 52.8
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.9e-19 100.1 258 29.5
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.3e-18 96.7 301 28.9
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 3.6e-17 93.2 218 29.4
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.6e-17 93.2 61 70.5
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 5.2e-16 89.4 153 40.5
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 8.9e-16 88.6 81 59.3
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.3e-14 84.7 74 58.1
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.3e-14 84.7 204 27.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.7e-14 84.3 56 69.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.6e-12 77.8 50 68.0
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 3.5e-12 76.6 47 72.3
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.7e-11 74.3 304 23.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 2.3e-11 73.9 304 23.0
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-10 71.6 78 50.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.6e-09 67.8 39 76.9
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.8e-09 67.0 40 75.0
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 4.7e-09 66.2 226 23.9


User provided reference genes

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