Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 2728.4 1422 100.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1681.4 1491 61.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1645.9 1491 59.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1644.8 1491 59.7
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1643.2 1491 59.7
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1626.3 1577 57.6
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1617.8 1502 59.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1612.4 1502 59.8
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 1605.1 1508 58.8
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1582.4 1501 58.1
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1572.4 1501 57.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1568.9 1500 56.9
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1565.8 1494 58.2
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1558.1 1502 57.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1548.1 1500 56.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1533.1 1496 57.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1524.6 1391 60.0
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1512.3 1509 55.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1510.0 1582 53.7
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1506.5 1504 56.4
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1503.0 1502 56.1
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1500.7 1503 56.2
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1493.8 1466 56.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1484.2 1533 55.3
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1469.1 1514 55.5
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1465.7 1492 54.2
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1444.5 1504 54.2
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1423.3 1713 49.4
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1416.7 1495 52.0
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1416.7 1523 52.5
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1412.9 1492 51.7
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1408.3 1499 53.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1402.9 1492 51.7
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1401.0 1492 52.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1392.1 1497 53.4
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1388.2 1493 51.6
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1382.9 1500 51.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1382.1 1485 52.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1381.7 1503 51.5
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1379.8 1490 52.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1377.8 1500 51.4
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1377.8 1503 51.3
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1376.3 1490 51.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1354.3 1503 51.6
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1338.6 1496 50.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1335.1 1579 48.9
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1329.7 1500 51.0
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1328.9 1393 55.3
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1326.2 1496 51.1
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1310.4 1536 49.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1300.8 1419 51.8
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1297.3 1483 49.1
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1297.0 1492 49.8
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1288.9 1498 50.3
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1285.0 1588 47.5
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1274.6 1493 49.4
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1270.4 1259 56.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1266.1 1406 51.7
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1257.3 1502 47.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1252.7 1518 49.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1250.0 1406 51.1
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1245.3 1557 47.2
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1235.7 1518 49.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1226.8 1508 47.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1221.8 1467 47.0
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1220.3 1473 48.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1205.3 1501 46.4
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1204.9 1509 46.7
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1204.1 1503 46.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1202.2 1508 47.2
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1196.8 1504 46.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1185.2 1493 47.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1181.8 1504 46.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1180.6 1587 44.2
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1165.2 1527 45.4
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1155.6 1692 42.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1149.0 1487 46.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1094.3 1499 44.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1091.6 1485 45.1
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 6.3e-285 984.9 1239 46.0
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 4.1e-284 982.2 1407 43.1
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 2.3e-271 939.9 1512 40.1
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 3.0e-271 939.5 1221 46.4
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 6.3e-261 905.2 1038 48.7
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 7.2e-257 891.7 1016 49.2
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 1.9e-228 797.3 2020 32.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 2.3e-223 780.4 735 55.8
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 4.0e-223 779.6 1461 36.8
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.8e-208 730.3 747 53.3
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.5e-187 660.2 1340 35.7
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.1e-171 606.3 796 48.9
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.9e-162 577.0 527 59.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.7e-158 562.8 769 44.1
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 5.3e-151 540.0 1572 29.0
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.3e-141 508.8 1575 26.7
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 8.9e-130 469.5 1536 26.8
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 3.2e-127 461.1 422 61.1
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.2e-121 442.6 391 59.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-116 424.9 608 42.6
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 3.2e-103 381.3 405 55.1
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.1e-103 380.9 741 35.0
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.5e-102 377.9 660 37.6
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 6.4e-96 357.1 1683 23.4
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.6e-91 341.3 644 34.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.5e-65 256.1 924 26.9
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.0e-61 243.4 205 61.0
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.6e-59 236.1 472 30.1
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.5e-57 229.6 301 44.2
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.3e-50 204.5 136 71.3
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.2e-40 172.6 410 31.2
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.5e-40 170.6 415 30.6
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.0e-37 163.7 232 41.4
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-36 160.2 302 38.7
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.0e-36 159.5 371 32.6
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.5e-31 142.5 109 63.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.7e-30 138.3 188 43.1
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 5.7e-28 131.3 109 59.6
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.0e-26 124.4 106 56.6
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 9.1e-26 124.0 125 52.8
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.8e-21 109.8 114 50.9
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 5.7e-20 104.8 144 45.1
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 7.5e-20 104.4 168 39.3
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.4e-18 98.2 90 57.8
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.7e-16 93.2 113 51.3
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 9.5e-15 87.4 68 66.2
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.6e-14 86.7 68 61.8
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 5.2e-13 81.6 142 38.7
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.4e-12 79.0 298 24.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.2e-09 70.5 66 53.0
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-09 70.5 75 50.7
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 4.6e-09 68.6 89 44.9
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.7e-08 66.6 63 55.6
C04p11270 Brassica napus HOM05D004110 ORTHO05D021644 1.5e-07 63.5 48 64.6
BolC4t22766H Brassica oleracea HOM05D004110 ORTHO05D021644 1.5e-07 63.5 48 64.6
C08p02530 Brassica napus HOM05D004110 ORTHO05D021644 2.5e-07 62.8 49 61.2
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.3e-07 62.4 70 50.0
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 3.3e-07 62.4 106 41.5
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 4.3e-07 62.0 104 41.3


User provided reference genes

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