Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 0.0e+00 1811.6 931 100.0
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1676.8 946 90.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 0.0e+00 1669.1 946 90.4
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 0.0e+00 1667.5 952 90.4
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 0.0e+00 1666.0 946 90.5
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 0.0e+00 1666.0 946 90.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 0.0e+00 1663.7 951 89.7
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 0.0e+00 1662.5 952 90.0
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 0.0e+00 1660.2 952 90.0
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1659.0 952 89.2
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 0.0e+00 1656.3 952 89.1
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1655.6 952 89.3
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1653.3 952 88.8
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 0.0e+00 1653.3 952 89.1
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 0.0e+00 1651.3 952 89.9
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 0.0e+00 1649.4 952 89.0
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 0.0e+00 1648.6 954 89.1
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 0.0e+00 1647.5 936 90.7
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1644.8 952 88.8
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1644.8 952 88.8
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1644.4 947 89.4
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1643.2 952 88.8
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1642.9 952 88.3
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 0.0e+00 1639.0 952 88.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 0.0e+00 1638.2 953 89.0
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 0.0e+00 1638.2 988 86.4
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1637.5 981 86.2
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 0.0e+00 1636.7 954 88.4
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1635.2 981 86.0
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 0.0e+00 1634.8 952 88.1
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 1634.4 953 88.0
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1633.6 952 88.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1632.8 953 88.6
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1632.8 952 88.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 0.0e+00 1632.8 1000 84.9
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1630.9 981 86.0
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 0.0e+00 1626.3 952 87.8
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1625.1 952 87.4
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1620.5 947 88.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1619.0 952 87.3
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 0.0e+00 1618.2 952 87.5
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 0.0e+00 1617.4 954 88.1
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 0.0e+00 1616.7 968 86.2
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1614.7 952 87.3
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 0.0e+00 1613.6 952 87.2
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 0.0e+00 1609.0 952 86.3
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 0.0e+00 1605.5 952 86.3
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 0.0e+00 1600.1 951 86.1
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 0.0e+00 1598.9 952 85.8
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1598.6 952 85.5
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 0.0e+00 1597.0 952 85.4
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 0.0e+00 1595.9 951 86.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1595.9 952 86.3
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1592.8 952 85.5
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1592.0 951 86.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1592.0 951 86.0
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 0.0e+00 1592.0 951 86.0
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1591.6 952 86.7
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 0.0e+00 1591.2 951 86.0
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1590.9 951 86.0
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 0.0e+00 1590.9 951 86.0
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 0.0e+00 1590.9 951 85.9
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1590.1 952 85.0
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1589.3 952 85.2
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1589.3 952 85.4
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 0.0e+00 1588.5 952 85.8
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1587.4 951 85.8
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1587.4 973 85.1
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 0.0e+00 1586.2 952 85.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 0.0e+00 1583.5 951 85.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 0.0e+00 1578.1 951 84.4
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 0.0e+00 1577.4 921 87.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1577.4 931 88.0
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1577.0 953 85.3
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 0.0e+00 1575.1 930 88.0
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1574.3 952 84.1
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1572.0 952 85.2
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 0.0e+00 1571.2 952 85.3
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 0.0e+00 1567.7 952 84.9
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 0.0e+00 1563.5 952 85.0
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1562.0 952 83.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1561.6 958 84.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 0.0e+00 1558.1 905 89.4
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 0.0e+00 1555.0 952 84.5
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 0.0e+00 1552.0 951 84.5
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 0.0e+00 1547.3 952 84.3
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1540.4 1002 80.6
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1530.8 952 81.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 0.0e+00 1521.5 952 81.7
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 0.0e+00 1506.9 972 81.3
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 0.0e+00 1449.1 953 79.0
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 0.0e+00 1447.2 1045 74.5
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1446.0 946 79.7
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1444.9 952 78.5
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 0.0e+00 1409.0 1011 75.2
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 0.0e+00 1384.8 952 76.8
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 0.0e+00 1382.9 952 74.2
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 0.0e+00 1370.9 958 73.9
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 0.0e+00 1246.5 868 73.4
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1225.3 963 66.1
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1217.6 964 64.9
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1215.3 978 65.3
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1207.2 962 65.6
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1192.2 952 65.1
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1181.8 945 64.9
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 6.1e-297 1024.2 986 58.3
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 5.7e-295 1017.7 565 92.6
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.8e-256 887.9 536 85.3
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 1.2e-255 887.1 469 94.9
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-253 880.6 623 75.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.6e-249 866.7 980 48.6
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.6e-249 866.7 781 61.5
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.9e-238 828.6 545 78.9
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 1.3e-225 787.3 476 85.7
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.7e-210 735.3 387 97.4
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.0e-199 700.3 438 82.6
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-194 684.5 492 75.0
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 2.5e-189 666.8 471 77.1
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 3.1e-184 649.8 430 79.5
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 2.5e-173 613.6 344 89.0
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 1.2e-148 531.6 282 95.4
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 8.7e-126 455.7 254 91.3
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 5.4e-120 436.4 274 81.8
Prupe.3G108400 Prunus persica HOM05D003504 ORTHO05D004006 2.7e-103 380.9 336 65.8
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 8.7e-102 375.9 204 96.6
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 2.7e-66 258.1 234 61.5
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.0e-65 253.8 133 93.2
RcHm_v2.0_Chr5g0024381 Rosa chinensis HOM05D003504 ORTHO05D004006 2.0e-58 231.9 126 96.0
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 5.4e-43 180.6 155 63.2
Potri.004G000750 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.3e-41 176.0 99 93.9
AagrBONN_evm.TU.Sc2ySwM_362.1411 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.8e-38 165.6 662 25.1
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.3e-33 149.4 133 63.2
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 1.6e-26 125.9 97 71.1
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 6.6e-25 120.6 88 69.3
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.1e-24 119.8 114 57.9
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 8.1e-23 113.6 92 68.5
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 1.1e-19 103.2 157 43.3
TPR.G35990 Trifolium pratense HOM05D003504 ORTHO05D004006 3.2e-19 101.7 71 76.1
TPR.G38062 Trifolium pratense HOM05D003504 ORTHO05D004006 4.1e-19 101.3 71 74.6
unitig_0.g2295 Utricularia gibba HOM05D003504 ORTHO05D004006 4.1e-19 101.3 72 76.4
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 5.1e-17 94.4 78 60.3
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 9.6e-16 90.1 133 42.1
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 1.6e-15 89.4 71 66.2
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 3.6e-15 88.2 140 42.1
Lsat_1_v5_gn_1_87860 Lactuca sativa HOM05D002142 ORTHO05D001189 4.9e-12 77.8 68 63.2
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 7.8e-10 70.5 273 25.6
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 3.0e-09 68.6 69 55.1
Lsat_1_v5_gn_5_53440 Lactuca sativa HOM05D003504 ORTHO05D004006 5.1e-09 67.8 62 62.9
Psat6g175760 Pisum sativum HOM05D001676 ORTHO05D001539 1.5e-08 66.2 43 76.7
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 2.8e-07 62.0 32 84.4


User provided reference genes

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