Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.179 Carica papaya HOM05D004351 ORTHO05D005196 6.8e-81 303.9 150 100.0
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.4e-70 268.9 146 88.4
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 2.4e-70 268.9 146 88.4
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 3.2e-70 268.5 145 87.6
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 5.4e-70 267.7 145 86.2
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 9.2e-70 266.9 146 87.7
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 2.0e-69 265.8 147 86.4
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 2.7e-69 265.4 142 89.4
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 2.7e-69 265.4 146 85.6
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 2.7e-69 265.4 142 89.4
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 3.5e-69 265.0 142 87.3
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 3.5e-69 265.0 145 85.5
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 4.6e-69 264.6 142 88.0
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 1.0e-68 263.5 142 87.3
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.7e-68 262.7 142 88.0
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.7e-68 262.7 142 86.6
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 2.3e-68 262.3 142 86.6
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 2.3e-68 262.3 145 86.2
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 3.9e-68 261.5 142 86.6
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 3.9e-68 261.5 142 85.9
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 3.9e-68 261.5 142 87.3
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 3.9e-68 261.5 142 87.3
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 5.0e-68 261.2 146 83.6
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 6.6e-68 260.8 142 88.0
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 8.6e-68 260.4 142 88.0
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 8.6e-68 260.4 142 85.9
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 1.1e-67 260.0 145 84.1
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.1e-67 260.0 142 86.6
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.5e-67 259.6 142 85.9
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 1.9e-67 259.2 142 85.2
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.9e-67 259.2 142 86.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 1.9e-67 259.2 145 84.8
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 2.5e-67 258.8 146 84.2
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 3.3e-67 258.5 142 85.2
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 3.3e-67 258.5 146 82.2
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 3.3e-67 258.5 142 85.9
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 4.3e-67 258.1 146 84.2
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 4.3e-67 258.1 142 86.6
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 5.6e-67 257.7 145 84.1
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 5.6e-67 257.7 145 83.4
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 5.6e-67 257.7 142 87.3
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 5.6e-67 257.7 142 88.0
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 7.3e-67 257.3 142 84.5
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 7.3e-67 257.3 145 83.4
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 7.3e-67 257.3 145 82.1
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 9.5e-67 256.9 142 86.6
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 9.5e-67 256.9 142 85.9
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.2e-66 256.5 142 84.5
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 1.2e-66 256.5 142 83.8
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 1.2e-66 256.5 142 85.2
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.6e-66 256.1 146 83.6
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 1.6e-66 256.1 142 84.5
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.6e-66 256.1 146 82.9
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.6e-66 256.1 142 83.8
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 2.1e-66 255.8 145 82.1
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 2.1e-66 255.8 145 82.8
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 2.1e-66 255.8 142 85.9
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 2.1e-66 255.8 141 85.8
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 2.8e-66 255.4 142 85.2
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 3.6e-66 255.0 145 82.8
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 3.6e-66 255.0 146 87.0
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 4.7e-66 254.6 145 82.1
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 6.2e-66 254.2 145 82.8
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 8.1e-66 253.8 142 82.4
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 1.1e-65 253.4 145 82.1
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 1.4e-65 253.1 146 82.9
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 1.4e-65 253.1 145 81.4
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.8e-65 252.7 142 83.1
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.8e-65 252.7 145 80.0
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.8e-65 252.7 145 80.0
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 1.8e-65 252.7 142 84.5
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 1.8e-65 252.7 142 84.5
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.8e-65 252.7 142 85.2
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 3.1e-65 251.9 146 82.9
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.1e-65 251.9 146 82.2
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 6.8e-65 250.8 145 80.7
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 6.8e-65 250.8 142 83.1
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 8.9e-65 250.4 145 80.0
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 8.9e-65 250.4 143 85.3
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 1.5e-64 249.6 142 82.4
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 1.5e-64 249.6 142 82.4
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.5e-64 249.6 142 81.7
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 1.5e-64 249.6 142 82.4
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 2.6e-64 248.8 142 82.4
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 2.6e-64 248.8 142 81.7
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 3.4e-64 248.4 142 83.1
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 3.4e-64 248.4 146 79.5
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 4.4e-64 248.1 142 81.7
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 4.4e-64 248.1 142 81.7
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 7.5e-64 247.3 163 74.2
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 7.5e-64 247.3 145 79.3
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 7.5e-64 247.3 136 86.0
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.3e-63 246.5 142 80.3
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 2.2e-63 245.7 146 80.1
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 2.2e-63 245.7 142 79.6
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 2.9e-63 245.4 142 81.0
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 4.9e-63 244.6 135 85.2
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 4.9e-63 244.6 142 81.7
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 6.4e-63 244.2 142 81.7
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 6.4e-63 244.2 142 81.7
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 1.1e-62 243.4 146 79.5
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.4e-62 243.0 142 81.0
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.4e-62 243.0 146 80.1
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 3.5e-61 238.4 142 76.8
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 4.6e-61 238.0 142 78.2
CANSAT54G0522 Cannabis sativa HOM05D004351 ORTHO05D005196 1.6e-58 229.6 131 81.7
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 2.8e-58 228.8 146 71.2
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 2.4e-57 225.7 127 81.9
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 8.9e-57 223.8 146 67.1
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 9.9e-56 220.3 145 73.1
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 3.2e-54 215.3 146 71.9
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 4.6e-53 211.5 139 74.8
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 3.9e-52 208.4 146 69.9
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 8.6e-52 207.2 142 69.0
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 1.5e-51 206.5 142 67.6
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 2.1e-50 202.6 111 85.6
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 5.8e-48 194.5 142 63.4
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 8.4e-47 190.7 110 80.0
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 2.4e-46 189.1 142 61.3
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.3e-44 183.3 145 67.6
MELO3C031085.2 Cucumis melo HOM05D004351 ORTHO05D005196 1.6e-37 159.8 166 51.2
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 1.5e-35 153.3 84 86.9
CBR_g36942 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-35 152.1 111 68.5
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 3.8e-31 138.7 126 52.4
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 3.8e-31 138.7 126 51.6
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 8.2e-26 120.9 108 61.1
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 1.5e-24 116.7 116 43.1
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 7.1e-22 107.8 108 55.6
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 1.3e-20 103.6 124 42.7
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 2.3e-20 102.8 116 38.8
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.8e-17 93.2 58 70.7
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.5e-16 90.1 48 85.4
arahy.Tifrunner.gnm1.ann1.FI1QHS Arachis hypogaea HOM05D004351 ORTHO05D005196 6.5e-15 84.7 77 62.3
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.2e-10 69.7 33 93.9
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 4.8e-10 68.6 46 71.7
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 1.0e-07 60.8 31 87.1


User provided reference genes

Program Settings