Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 2.6e-42 174.9 83 100.0
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 1.0e-14 83.2 68 61.8
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 2.6e-13 78.6 57 64.9
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 3.4e-13 78.2 57 64.9
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 7.5e-13 77.0 56 64.3
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 7.5e-13 77.0 56 64.3
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 7.5e-13 77.0 56 64.3
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 7.5e-13 77.0 56 64.3
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 7.5e-13 77.0 56 66.1
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 9.8e-13 76.6 53 69.8
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 9.8e-13 76.6 76 56.6
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 1.3e-12 76.3 53 67.9
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 2.2e-12 75.5 66 59.1
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 2.8e-12 75.1 68 54.4
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 3.7e-12 74.7 69 55.1
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 4.8e-12 74.3 53 66.0
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 8.3e-12 73.6 56 66.1
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 1.1e-11 73.2 56 60.7
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.1e-11 73.2 61 60.7
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 2.4e-11 72.0 72 50.0
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 5.4e-11 70.9 77 54.5
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 7.0e-11 70.5 70 54.3
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 1.6e-10 69.3 57 61.4
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 1.6e-10 69.3 57 61.4
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 1.6e-10 69.3 57 61.4
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 1.6e-10 69.3 57 61.4
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 1.6e-10 69.3 57 61.4
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 1.6e-10 69.3 79 49.4
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.6e-10 69.3 61 62.3
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 2.0e-10 68.9 57 61.4
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 2.0e-10 68.9 72 51.4
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 2.7e-10 68.6 70 52.9
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 2.7e-10 68.6 65 55.4
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 7.7e-10 67.0 58 60.3
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 1.0e-09 66.6 67 53.7
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 1.0e-09 66.6 74 52.7
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.0e-09 66.6 65 55.4
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.3e-09 66.2 63 54.0
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 1.7e-09 65.9 67 55.2
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.2e-09 65.5 56 57.1
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.2e-09 65.5 56 57.1
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 2.2e-09 65.5 56 57.1
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 2.2e-09 65.5 59 61.0
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 2.2e-09 65.5 75 52.0
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 2.9e-09 65.1 50 64.0
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.9e-09 65.1 61 59.0
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 2.9e-09 65.1 52 65.4
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 6.5e-09 63.9 55 61.8
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 8.5e-09 63.5 62 51.6
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 8.5e-09 63.5 65 58.5
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 1.1e-08 63.2 59 59.3
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.5e-08 62.8 65 50.8
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.5e-08 62.8 63 50.8
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 1.5e-08 62.8 60 56.7
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 1.9e-08 62.4 62 53.2
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 1.9e-08 62.4 56 53.6
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 5.5e-08 60.8 62 51.6
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.2e-08 60.5 60 50.0
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.2e-08 60.5 60 50.0
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 7.2e-08 60.5 64 53.1
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 9.4e-08 60.1 59 54.2
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 9.4e-08 60.1 55 60.0
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 9.4e-08 60.1 53 58.5
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 1.2e-07 59.7 60 55.0
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 1.2e-07 59.7 67 47.8
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 2.7e-07 58.5 55 58.2
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.7e-07 58.5 61 50.8
Haze_25049 Corylus avellana HOM05D002917 ORTHO05D002431 3.6e-07 58.2 56 51.8
Sopen12g034410 Solanum pennellii HOM05D023424 ORTHO05D002431 3.6e-07 58.2 73 45.2
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 4.7e-07 57.8 52 57.7
MBI02_g18928_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 4.7e-07 57.8 66 45.5
MBI05_g00334_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 4.7e-07 57.8 63 47.6
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 6.1e-07 57.4 54 57.4
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 6.1e-07 57.4 59 54.2
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 8.0e-07 57.0 82 40.2
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 8.0e-07 57.0 82 40.2
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 8.0e-07 57.0 82 40.2
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 8.0e-07 57.0 56 55.4
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 8.0e-07 57.0 57 56.1
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 1.0e-06 56.6 53 50.9
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 1.4e-06 56.2 54 55.6
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 1.8e-06 55.8 56 51.8
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 1.8e-06 55.8 49 63.3
Phvul.009G139200 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 1.8e-06 55.8 56 51.8
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 1.8e-06 55.8 73 47.9
Solyc12g099780.2 Solanum lycopersicum HOM05D023424 ORTHO05D002431 1.8e-06 55.8 64 46.9
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 1.8e-06 55.8 68 42.6
VMungo1309G1910 Vigna mungo HOM05D002917 ORTHO05D002431 1.8e-06 55.8 56 51.8
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
Lj4g0006175 Lotus japonicus HOM05D002917 ORTHO05D002431 2.3e-06 55.5 56 50.0
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 2.3e-06 55.5 70 41.4
BcaB04g19997 Brassica carinata HOM05D002917 ORTHO05D002431 3.0e-06 55.1 74 43.2
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 3.0e-06 55.1 82 39.0
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 3.0e-06 55.1 82 39.0
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 3.0e-06 55.1 56 48.2
AT5G64850 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 4.0e-06 54.7 59 49.2
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea HOM05D002917 ORTHO05D002431 4.0e-06 54.7 56 48.2
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea HOM05D002917 ORTHO05D002431 4.0e-06 54.7 56 48.2
MBI13_g08983_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 5.2e-06 54.3 60 50.0
MD15G1332200 Malus domestica HOM05D002917 ORTHO05D002431 5.2e-06 54.3 72 38.9
AL8G42330 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 6.8e-06 53.9 53 52.8
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 6.8e-06 53.9 74 40.5
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 53.9 74 40.5
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 6.8e-06 53.9 74 40.5
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 6.8e-06 53.9 70 41.4
Glyma.05G184200 Glycine max HOM05D002917 ORTHO05D002431 6.8e-06 53.9 56 48.2
Glyma.08G142000 Glycine max HOM05D002917 ORTHO05D002431 6.8e-06 53.9 56 48.2
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 6.8e-06 53.9 50 58.0
MD01G1020100 Malus domestica HOM05D002917 ORTHO05D002431 6.8e-06 53.9 72 38.9
Lalb_Chr12g0203511 Lupinus albus HOM05D002917 ORTHO05D002431 8.8e-06 53.5 57 50.9
Sp2g27930 Schrenkiella parvula HOM05D002917 ORTHO05D002431 8.8e-06 53.5 74 41.9
Solyc11g064930.3 Solanum lycopersicum HOM05D012161 ORTHO05D002431 8.8e-06 53.5 61 45.9


User provided reference genes

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