Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 3.6e-244 847.8 433 100.0
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.6e-207 726.1 414 88.4
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 1.0e-206 723.4 414 87.9
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 2.3e-206 722.2 414 87.4
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 3.0e-206 721.8 414 87.7
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.1e-203 713.4 414 85.7
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 1.1e-203 713.4 414 85.3
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 1.8e-203 712.6 425 83.8
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 7.0e-203 710.7 414 86.7
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 1.7e-201 706.1 414 85.0
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 3.2e-200 701.8 414 83.3
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 3.6e-199 698.4 418 84.0
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 3.6e-199 698.4 414 84.3
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 3.6e-199 698.4 414 84.3
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 6.1e-199 697.6 415 83.6
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.8e-198 696.0 414 82.9
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 3.0e-198 695.3 414 83.3
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 3.9e-198 694.9 414 83.6
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 5.2e-198 694.5 414 83.3
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 1.5e-197 693.0 414 83.1
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 4.4e-197 691.4 414 83.8
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 4.4e-197 691.4 414 82.1
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.7e-196 688.3 414 82.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 8.2e-196 687.2 414 82.9
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 1.1e-195 686.8 417 82.0
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.1e-195 686.8 414 83.6
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.1e-195 686.8 414 82.1
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.8e-195 686.0 414 81.6
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 2.4e-195 685.6 415 82.4
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 2.4e-195 685.6 418 80.4
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 4.1e-195 684.9 413 82.3
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 7.0e-195 684.1 414 81.6
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 9.1e-195 683.7 414 81.6
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 1.6e-194 682.9 414 81.4
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 1.6e-194 682.9 414 81.4
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 5.9e-194 681.0 414 83.8
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 7.7e-194 680.6 417 81.3
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 2.2e-193 679.1 423 81.8
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 5.0e-193 677.9 414 82.4
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 3.2e-192 675.2 427 79.4
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 3.2e-192 675.2 427 79.4
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 3.2e-192 675.2 414 80.9
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 5.5e-192 674.5 422 79.9
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 5.5e-192 674.5 414 81.6
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 7.2e-192 674.1 414 81.9
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 1.2e-191 673.3 414 81.2
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 1.6e-191 672.9 414 80.9
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.6e-191 672.9 431 78.4
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 2.1e-191 672.5 427 78.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 2.1e-191 672.5 427 78.9
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 6.1e-191 671.0 414 79.2
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 6.1e-191 671.0 414 80.7
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 1.4e-190 669.8 414 79.5
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 5.2e-190 667.9 454 74.9
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 6.7e-190 667.5 402 80.6
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 8.8e-190 667.2 452 75.2
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 1.2e-189 666.8 414 79.7
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.6e-189 665.6 413 80.9
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 5.7e-189 664.5 428 77.8
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 7.5e-189 664.1 414 80.0
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.7e-188 662.9 414 80.0
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 2.2e-188 662.5 414 79.7
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 4.8e-188 661.4 414 78.3
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 8.3e-188 660.6 414 79.0
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 8.3e-188 660.6 414 78.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 1.4e-187 659.8 414 79.2
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 5.3e-187 657.9 414 78.5
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 1.6e-186 656.4 491 69.7
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.5e-186 655.2 414 77.5
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 5.9e-186 654.4 421 78.4
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 7.7e-186 654.1 414 78.3
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 1.3e-185 653.3 414 77.3
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 1.3e-185 653.3 415 77.8
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 1.7e-185 652.9 408 80.1
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 1.7e-185 652.9 414 77.5
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.8e-185 651.7 421 77.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 4.2e-184 648.3 414 78.5
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.2e-180 636.0 462 71.2
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 4.8e-180 634.8 414 76.6
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 2.4e-179 632.5 414 76.6
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 4.1e-179 631.7 414 76.1
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.6e-178 629.8 414 76.1
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 5.9e-178 627.9 414 75.4
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.0e-177 627.1 414 73.9
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 3.8e-177 625.2 414 76.3
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 6.6e-177 624.4 414 76.3
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 6.6e-177 624.4 452 72.1
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 1.5e-176 623.2 416 74.0
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 4.2e-176 621.7 414 74.9
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.3e-174 615.9 421 75.5
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.1e-171 607.1 414 72.0
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.0e-170 602.8 419 74.7
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 5.0e-169 598.2 401 72.6
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 5.0e-169 598.2 414 70.8
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 6.6e-169 597.8 415 73.7
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 6.6e-169 597.8 415 73.7
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 4.3e-168 595.1 414 71.7
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 6.8e-166 587.8 415 72.5
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 1.5e-165 586.6 414 70.8
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 5.8e-165 584.7 414 70.8
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 3.2e-163 578.9 448 67.9
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 1.0e-161 573.9 438 66.4
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 1.0e-161 573.9 398 72.4
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 4.7e-159 565.1 414 69.1
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 7.5e-157 557.8 414 71.7
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.9e-156 555.1 361 77.3
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 3.9e-153 545.4 445 63.8
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 4.3e-152 542.0 414 67.1
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.7e-148 528.9 413 64.2
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 6.4e-148 528.1 428 65.7
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 9.5e-144 514.2 421 63.2
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 1.5e-141 506.9 414 63.8
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 2.3e-137 493.0 414 63.5
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 1.9e-136 490.0 422 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 1.2e-133 480.7 416 60.1
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 3.8e-132 475.7 322 75.5
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 4.2e-131 472.2 361 67.0
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 7.1e-131 471.5 304 75.7
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.3e-121 440.7 299 72.6
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 1.3e-121 440.7 280 82.1
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 1.1e-112 411.0 357 59.9
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.1e-110 404.4 414 54.1
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.3e-105 387.5 293 66.6
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 4.2e-91 339.3 242 69.4
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 2.3e-89 333.6 370 51.9
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 6.7e-89 332.0 309 57.6
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 1.1e-86 324.7 341 52.8
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 1.1e-80 304.7 227 71.4
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 8.8e-73 278.5 181 76.2
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 1.2e-72 278.1 415 41.7
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.5e-64 251.1 425 40.9
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 3.7e-63 246.5 218 64.2
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 5.4e-62 242.7 149 83.9
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 7.7e-61 238.8 183 68.9
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 3.8e-60 236.5 434 35.7
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 4.7e-58 229.6 432 38.0
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.1e-54 216.5 436 37.6
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 1.0e-52 211.8 366 37.4
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 1.1e-51 208.4 127 78.7
Aqoxy1G03228 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 4.3e-51 206.5 187 62.6
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 5.6e-51 206.1 411 38.9
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 9.5e-51 205.3 498 33.7
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 5.8e-48 196.1 520 33.1
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.3e-44 184.9 127 66.1
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.1e-43 181.8 115 80.9
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 1.9e-43 181.0 115 80.9
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 4.3e-43 179.9 117 78.6
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 8.9e-41 172.2 113 69.9
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.4e-38 164.9 117 71.8
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 9.2e-38 162.2 114 71.9
SEGI_14617 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.0e-36 158.7 136 61.0
SEGI_10615 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 2.5e-35 154.1 116 69.8
TPR.G40025 Trifolium pratense HOM05D003169 ORTHO05D003700 3.1e-33 147.1 98 68.4
TPR.G20402 Trifolium pratense HOM05D003169 ORTHO05D003700 7.6e-24 115.9 60 95.0
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.5e-19 101.7 65 69.2
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 1.9e-19 101.3 70 68.6
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-18 97.8 96 52.1
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 6.9e-17 92.8 61 70.5
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 5.8e-16 89.7 75 56.0
TPR.G40298 Trifolium pratense HOM05D003169 ORTHO05D003700 5.8e-16 89.7 71 63.4
Actinidia33340 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.8e-15 87.0 77 64.9
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 3.8e-15 87.0 55 70.9
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 8.4e-15 85.9 53 73.6
SEGI_01096 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.8e-07 60.5 47 55.3
TPR.G36062 Trifolium pratense HOM05D003169 ORTHO05D410466 3.2e-06 57.4 37 67.6


User provided reference genes

Program Settings