Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 2.4e-47 191.8 95 100.0
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.8e-23 112.5 96 61.5
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 9.1e-23 110.2 96 60.4
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 1.2e-22 109.8 96 59.4
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.6e-22 109.4 96 55.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.3e-21 106.3 96 58.3
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.7e-21 105.9 96 59.4
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 8.5e-21 103.6 96 58.3
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 8.5e-21 103.6 96 58.3
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.1e-20 103.2 96 58.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.9e-20 102.4 96 58.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 2.5e-20 102.1 96 57.3
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.2e-19 99.8 96 56.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 2.1e-19 99.0 96 57.3
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 6.1e-19 97.4 96 56.2
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 8.0e-19 97.1 96 55.2
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.0e-18 96.7 91 53.8
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.0e-18 96.7 96 56.2
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.0e-18 96.7 96 55.2
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 3.0e-18 95.1 91 53.8
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 3.0e-18 95.1 96 55.2
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.0e-18 95.1 96 55.2
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 3.0e-18 95.1 96 56.2
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 6.8e-18 94.0 95 55.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 8.8e-18 93.6 91 53.8
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.2e-17 93.2 91 52.7
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.6e-17 92.0 91 51.6
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 2.6e-17 92.0 96 51.0
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.6e-17 92.0 92 52.2
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 2.6e-17 92.0 96 53.1
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 4.4e-17 91.3 96 53.1
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 4.4e-17 91.3 96 55.2
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 4.4e-17 91.3 92 52.2
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.7e-17 90.9 96 55.2
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 5.7e-17 90.9 96 54.2
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 5.7e-17 90.9 96 53.1
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 7.5e-17 90.5 96 54.2
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 7.5e-17 90.5 96 56.2
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.2e-16 89.0 96 54.2
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.2e-16 89.0 95 53.7
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.8e-16 88.6 96 54.2
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.8e-16 88.6 96 53.1
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 3.7e-16 88.2 85 57.6
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.3e-16 87.4 96 54.2
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.4e-15 86.3 96 52.1
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.8e-15 85.9 96 53.1
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.8e-15 85.9 91 50.5
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.8e-15 85.9 96 50.0
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.4e-15 85.5 96 52.1
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 7.0e-15 84.0 97 52.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 9.1e-15 83.6 97 51.5
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 9.1e-15 83.6 98 50.0
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.2e-14 83.2 103 48.5
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.6e-14 82.8 96 51.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 2.0e-14 82.4 97 51.5
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.0e-14 82.4 96 53.1
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 2.7e-14 82.0 97 51.5
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 5.9e-14 80.9 96 52.1
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 7.7e-14 80.5 96 50.0
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.3e-13 79.7 98 50.0
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 1.7e-13 79.3 96 53.1
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 5.0e-13 77.8 92 48.9
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 6.5e-13 77.4 96 45.8
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.1e-12 76.6 95 46.3
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.9e-12 75.9 92 47.8
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.9e-12 75.9 92 47.8
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.9e-12 75.9 92 47.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.9e-12 75.9 92 47.8
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-12 75.9 96 49.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.5e-12 75.5 92 47.8
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 3.2e-12 75.1 83 50.6
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.2e-12 75.1 98 49.0
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 4.2e-12 74.7 96 51.0
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 7.2e-12 73.9 96 42.7
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.0e-10 70.1 98 44.9
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.8e-10 69.3 97 49.5
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 6.8e-10 67.4 86 45.3
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.5e-09 66.2 97 46.4
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.5e-09 66.2 97 46.4
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.4e-09 65.1 98 41.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.4e-09 65.1 98 41.8
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.4e-09 64.7 96 42.7
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.4e-09 64.7 96 42.7
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 5.7e-09 64.3 55 58.2
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.8e-08 62.0 82 46.3
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 8.3e-08 60.5 82 45.1
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.3e-08 60.5 86 45.3
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 8.3e-08 60.5 95 40.0
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.1e-07 60.1 96 40.6
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.1e-07 58.5 86 44.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 9.2e-07 57.0 86 43.0
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.2e-06 56.6 96 41.7
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.2e-06 56.6 95 40.0
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 2.0e-06 55.8 86 41.9
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 2.0e-06 55.8 55 52.7
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.5e-06 55.1 95 40.0
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 4.5e-06 54.7 49 55.1


User provided reference genes

Program Settings