Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 1.5e-261 905.6 441 100.0
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 2.9e-180 635.6 467 70.0
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 7.9e-178 627.5 467 68.5
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 8.7e-177 624.0 468 69.4
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 9.6e-176 620.5 469 68.7
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 2.8e-175 619.0 474 68.4
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 4.8e-175 618.2 507 64.5
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 6.2e-175 617.8 474 68.6
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 6.2e-175 617.8 469 68.9
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 6.2e-175 617.8 469 68.9
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 2.4e-174 615.9 466 67.2
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 3.4e-173 612.1 469 67.0
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 1.3e-172 610.1 465 67.3
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 1.7e-172 609.8 474 67.5
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 2.9e-172 609.0 471 66.7
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.4e-171 606.7 467 67.2
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.9e-171 606.3 472 66.5
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 7.1e-171 604.4 470 66.8
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 7.1e-171 604.4 472 66.5
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 6.0e-170 601.3 473 66.4
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 7.9e-170 600.9 466 66.5
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 1.0e-169 600.5 468 66.5
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 3.0e-169 599.0 465 66.7
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 3.0e-169 599.0 465 66.2
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 5.1e-169 598.2 468 65.4
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 1.5e-168 596.7 472 65.9
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 3.3e-168 595.5 465 65.8
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 7.4e-168 594.3 443 68.2
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 1.6e-167 593.2 475 66.1
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 6.3e-167 591.3 467 65.7
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 1.4e-166 590.1 468 64.7
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 2.4e-166 589.3 465 64.9
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 4.1e-166 588.6 467 65.3
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 6.9e-166 587.8 458 66.2
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 4.5e-165 585.1 467 65.3
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 7.7e-165 584.3 467 65.3
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 1.3e-164 583.6 467 64.9
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 1.7e-164 583.2 465 64.9
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 1.7e-164 583.2 467 64.5
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 6.5e-164 581.3 467 64.9
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 1.1e-163 580.5 466 67.4
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 1.9e-163 579.7 466 64.8
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 9.4e-163 577.4 469 62.9
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 1.2e-162 577.0 467 64.9
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 1.2e-162 577.0 468 64.1
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 3.6e-162 575.5 425 67.5
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 1.8e-161 573.2 467 64.2
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 3.9e-161 572.0 463 65.9
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.5e-160 570.1 413 68.8
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 2.5e-160 569.3 413 69.7
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 3.3e-160 568.9 413 70.0
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 5.7e-160 568.2 413 69.5
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 9.7e-160 567.4 468 63.9
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 9.7e-160 567.4 468 63.7
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 9.7e-160 567.4 468 63.7
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 1.7e-159 566.6 422 68.2
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 3.7e-159 565.5 436 67.7
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 4.8e-159 565.1 468 63.7
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 4.8e-159 565.1 468 63.7
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 1.1e-158 563.9 413 70.2
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 1.4e-158 563.5 422 68.2
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 3.1e-158 562.4 413 69.0
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 4.5e-157 558.5 446 65.2
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 1.0e-156 557.4 466 63.3
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.7e-156 556.6 418 67.2
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 1.7e-156 556.6 477 61.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.1e-155 553.9 438 65.8
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.1e-155 553.9 413 68.0
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 1.9e-155 553.1 434 64.1
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 4.2e-155 552.0 418 66.7
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.0e-153 547.4 396 69.4
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 4.4e-152 542.0 450 60.9
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.1e-150 535.8 470 61.5
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 1.2e-149 533.9 468 61.1
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.5e-149 533.5 449 60.4
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 1.2e-146 523.9 476 60.7
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 2.7e-146 522.7 472 57.8
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 2.7e-146 522.7 379 69.9
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 3.6e-146 522.3 385 69.9
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 3.0e-145 519.2 396 64.9
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 7.4e-144 514.6 413 65.1
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 7.7e-141 504.6 545 53.2
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 1.3e-140 503.8 422 59.5
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 1.3e-140 503.8 592 49.3
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 2.2e-140 503.1 461 59.9
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 7.2e-131 471.5 348 69.3
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 7.2e-131 471.5 414 58.7
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 2.6e-128 463.0 468 55.8
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 3.4e-120 436.0 308 69.8
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 7.5e-120 434.9 335 63.9
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 1.3e-116 424.1 425 55.5
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 2.0e-112 410.2 396 52.3
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 2.6e-112 409.8 403 50.1
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 5.4e-110 402.1 397 51.6
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 2.0e-109 400.2 286 71.7
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.1e-105 387.9 356 55.9
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.9e-102 377.1 471 48.8
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 4.1e-102 375.9 405 46.2
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 4.0e-81 306.2 202 73.3
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 1.1e-73 281.6 322 52.8
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 9.0e-73 278.5 213 66.7
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 2.0e-72 277.3 432 36.8
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 1.4e-70 271.2 275 54.2
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 1.3e-60 238.0 300 50.3
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.8e-60 237.7 185 68.1
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.3e-58 231.5 171 68.4
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 4.5e-56 223.0 114 92.1
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 3.8e-55 219.9 174 62.6
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 5.0e-55 219.5 148 74.3
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 1.1e-49 201.8 140 75.0
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 6.9e-49 199.1 139 67.6
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 2.6e-48 197.2 148 66.2
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 2.6e-48 197.2 148 66.2
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 2.7e-45 187.2 165 61.2
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 1.5e-43 181.4 142 64.1
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 3.7e-42 176.8 117 76.9
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 5.5e-38 162.9 93 78.5
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 1.5e-35 154.8 121 63.6
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 1.4e-33 148.3 83 81.9
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 4.7e-29 133.3 120 60.0
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 2.0e-27 127.9 67 88.1
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 3.2e-22 110.5 78 70.5
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 2.0e-16 91.3 98 48.0
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 1.6e-13 81.6 48 81.2
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 2.3e-12 77.8 113 41.6
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 4.4e-11 73.6 34 94.1
CDE07G0572 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 2.4e-09 67.8 397 25.4
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 3.1e-09 67.4 53 64.2
PRCOL_00004288 Prasinoderma coloniale HOM05D027521 ORTHO05D007151 6.6e-07 59.7 255 25.5
Cc11_g12670 Coffea canephora HOM05D005456 ORTHO05D006805 9.5e-06 55.8 378 23.0


User provided reference genes

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