Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 2.2e-210 735.3 357 100.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 3.0e-111 406.0 310 63.2
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 3.1e-108 396.0 291 65.6
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.6e-107 393.7 295 65.4
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.5e-107 392.1 310 60.3
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 5.5e-105 385.2 310 61.0
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.4e-105 384.4 294 62.9
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 8.0e-104 381.3 294 62.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 6.7e-103 378.3 294 61.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 7.5e-102 374.8 289 63.7
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.4e-100 370.5 306 58.2
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.8e-100 370.2 340 55.6
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.8e-100 370.2 290 62.8
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.3e-98 364.0 289 61.6
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.7e-98 363.6 296 58.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.1e-97 360.9 317 57.7
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.5e-97 360.5 295 59.7
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 9.1e-92 341.3 287 58.2
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 3.5e-91 339.3 314 54.1
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 3.8e-90 335.9 286 54.5
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.9e-89 333.6 291 56.0
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.2e-88 330.9 292 54.8
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 2.8e-88 329.7 313 52.7
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 3.6e-88 329.3 340 50.6
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.4e-87 327.4 313 52.1
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.4e-87 327.4 288 55.6
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.3e-87 326.6 320 51.9
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 6.8e-87 325.1 298 53.7
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 8.8e-87 324.7 298 52.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.8e-87 324.7 298 52.3
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 8.8e-87 324.7 290 54.8
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.0e-86 323.6 291 54.3
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 3.4e-86 322.8 288 54.2
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 5.7e-86 322.0 288 54.5
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 9.8e-86 321.2 285 55.8
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 9.8e-86 321.2 285 55.4
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-85 320.9 298 51.7
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.8e-85 319.7 289 54.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.3e-85 318.2 298 51.3
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 8.3e-85 318.2 284 53.5
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.1e-84 317.8 331 49.8
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.4e-84 317.4 288 52.8
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 2.4e-84 316.6 284 55.3
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 4.1e-84 315.8 290 53.8
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 7.0e-84 315.1 288 54.9
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.2e-83 314.3 290 54.1
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.6e-83 313.9 290 53.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.6e-83 313.9 336 50.9
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 4.5e-83 312.4 294 53.1
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 4.5e-83 312.4 303 51.8
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 5.9e-83 312.0 294 52.7
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.3e-82 310.1 340 47.4
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 2.9e-82 309.7 295 52.2
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 5.0e-82 308.9 345 46.1
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 6.6e-82 308.5 295 53.2
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 8.6e-82 308.1 340 47.1
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 8.6e-82 308.1 292 52.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-81 307.8 303 50.2
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.5e-81 306.6 299 52.2
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 3.3e-81 306.2 342 48.2
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 9.5e-81 304.7 286 51.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 1.6e-80 303.9 350 44.9
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.6e-80 303.9 352 46.9
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.3e-79 300.1 298 51.3
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 2.3e-79 300.1 326 48.8
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.0e-79 299.7 298 49.7
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 5.2e-79 298.9 291 51.5
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.4e-78 296.2 280 52.9
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 7.5e-78 295.0 429 39.6
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.2e-77 293.5 290 52.4
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 2.9e-77 293.1 318 47.2
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 6.4e-77 292.0 283 49.1
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 8.3e-77 291.6 302 49.3
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 2.4e-76 290.0 261 56.3
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 3.5e-75 286.2 288 49.7
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 7.8e-75 285.0 331 45.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.0e-74 283.1 342 44.4
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.9e-74 282.7 295 48.5
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 6.6e-74 282.0 300 47.7
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 3.1e-71 273.1 243 55.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.6e-70 270.0 304 49.7
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 4.9e-69 265.8 253 51.4
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.4e-68 264.2 335 45.1
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.4e-68 264.2 306 47.7
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 2.8e-64 250.0 308 44.2
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.9e-63 245.0 241 52.7
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 8.9e-63 245.0 295 46.1
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.2e-62 244.6 254 49.2
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.2e-60 236.5 234 51.7
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.1e-59 233.8 288 46.2
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.3e-58 231.1 209 54.5
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.4e-55 221.1 203 53.2
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 1.7e-53 214.2 259 43.6
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 2.4e-52 210.3 241 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 4.1e-52 209.5 293 42.3
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.5e-51 206.5 131 70.2
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 3.9e-50 203.0 120 78.3
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.9e-49 200.7 316 34.2
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 3.3e-49 199.9 171 57.3
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 1.2e-46 191.4 337 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.0e-46 190.7 207 48.3
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 2.0e-46 190.7 161 57.8
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 2.0e-46 190.7 131 65.6
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.9e-45 186.8 205 45.4
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.3e-42 177.2 227 42.7
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 6.6e-42 175.6 205 42.9
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 7.3e-41 172.2 229 41.9
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.3e-39 166.0 228 43.9
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 1.3e-37 161.4 266 36.5
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.8e-34 151.0 282 32.3
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 3.9e-34 149.8 235 39.6
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 3.9e-34 149.8 126 56.3
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 1.5e-33 147.9 211 41.2
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 1.9e-33 147.5 97 68.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 4.5e-30 136.3 122 52.5
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 1.7e-29 134.4 72 83.3
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.4e-28 131.3 72 79.2
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-27 127.9 275 30.2
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 2.1e-27 127.5 72 75.0
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.1e-27 127.5 192 42.7
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 3.5e-27 126.7 125 47.2
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 4.6e-27 126.3 78 73.1
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 6.0e-27 125.9 77 71.4
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 3.0e-26 123.6 112 49.1
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.2e-22 111.7 157 38.9
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 7.6e-22 109.0 243 31.7
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 3.8e-21 106.7 73 65.8
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 3.2e-20 103.6 136 42.6
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 8.7e-18 95.5 55 74.5
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 1.5e-17 94.7 195 29.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 1.1e-15 88.6 145 35.9
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 1.7e-13 81.3 121 36.4
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 2.2e-13 80.9 115 34.8
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 3.8e-13 80.1 128 32.8
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 8.5e-13 79.0 115 36.5
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 8.5e-13 79.0 115 35.7
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.1e-12 78.6 127 34.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.4e-12 78.2 109 37.6
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.9e-12 77.8 122 35.2
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 1.9e-12 77.8 122 35.2
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.2e-12 77.0 120 35.8
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.2e-12 77.0 115 33.0
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 7.2e-12 75.9 115 33.9
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 7.9e-11 72.4 156 34.0
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.3e-10 70.9 122 34.4
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 6.7e-10 69.3 111 34.2
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 1.7e-08 64.7 120 30.8
Lsat_1_v5_gn_3_35661 Lactuca sativa HOM05D002270 ORTHO05D231231 3.1e-07 60.5 41 65.9


User provided reference genes

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