Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.0e-212 743.0 699 100.0
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.6e-71 273.5 411 80.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.7e-70 271.6 411 76.9
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 6.2e-68 263.1 608 65.5
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 3.1e-67 260.8 603 59.0
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.0e-66 258.1 606 52.3
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 8.4e-65 252.7 411 66.4
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 9.2e-64 249.2 411 72.0
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.8e-60 237.7 236 66.9
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 4.8e-60 236.9 236 67.8
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 4.8e-60 236.9 236 67.8
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 8.1e-60 236.1 422 45.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.1e-59 235.7 409 68.5
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.4e-59 234.6 236 69.9
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 5.3e-59 233.4 236 69.1
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 5.3e-59 233.4 236 69.1
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 3.4e-58 230.7 603 65.2
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 4.4e-58 230.3 236 69.1
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 5.8e-58 229.9 236 68.2
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 5.8e-58 229.9 236 69.9
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 9.9e-58 229.2 236 67.8
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 9.9e-58 229.2 236 69.1
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 9.9e-58 229.2 236 69.1
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.3e-57 228.8 236 67.8
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.3e-57 228.8 417 55.4
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 3.2e-56 224.2 410 64.6
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 4.2e-56 223.8 236 66.9
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 9.3e-56 222.6 248 62.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.6e-55 221.9 236 67.4
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.6e-55 221.9 236 68.6
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 3.5e-55 220.7 410 71.0
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 6.0e-55 219.9 409 65.5
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 7.8e-55 219.5 606 60.1
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.0e-54 219.2 607 55.5
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.3e-54 218.8 244 62.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.7e-54 218.4 236 64.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.7e-54 218.4 236 64.4
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.3e-54 218.0 237 62.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 2.3e-54 218.0 606 57.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.3e-54 218.0 236 67.8
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 5.1e-54 216.9 410 64.6
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.5e-53 215.3 236 63.6
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.9e-53 214.9 442 66.3
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.5e-53 214.5 237 64.1
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.3e-53 214.2 236 63.6
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 5.6e-53 213.4 287 54.4
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 7.3e-53 213.0 411 48.7
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.6e-52 211.8 411 55.2
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.1e-51 209.1 296 54.1
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.0e-51 207.2 442 59.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 6.9e-51 206.5 395 56.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.0e-51 206.1 607 64.1
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 9.0e-51 206.1 237 62.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 9.0e-51 206.1 436 35.1
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 5.8e-50 203.4 388 46.6
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 5.8e-50 203.4 237 62.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 9.9e-50 202.6 237 61.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-49 202.2 237 61.6
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.9e-49 201.1 236 61.0
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.9e-49 201.1 237 62.9
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.8e-49 200.7 387 64.1
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 3.8e-49 200.7 236 61.4
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-48 198.4 237 60.8
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.2e-48 197.6 245 58.4
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 4.2e-48 197.2 237 62.0
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 4.2e-48 197.2 280 52.9
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.2e-48 197.2 280 52.9
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.1e-47 194.9 235 60.0
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 3.5e-47 194.1 236 59.7
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.0e-46 192.6 249 61.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 1.8e-46 191.8 418 66.0
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.3e-46 191.4 235 59.1
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 2.3e-46 191.4 419 57.0
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 3.9e-46 190.7 463 38.2
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.1e-45 189.1 388 51.0
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.9e-45 188.3 261 57.1
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.6e-45 186.8 615 38.4
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 7.4e-45 186.4 235 58.3
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 9.6e-45 186.0 416 72.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.3e-44 185.7 393 76.1
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 1.1e-43 182.6 222 59.9
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.4e-43 182.2 217 65.4
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.6e-42 177.9 237 59.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.5e-42 177.2 219 58.4
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 5.8e-42 176.8 389 75.1
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 1.1e-40 172.6 229 56.8
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 6.0e-39 166.8 389 57.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 3.9e-38 164.1 210 56.7
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 6.7e-38 163.3 235 52.3
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 4.0e-35 154.1 239 51.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-32 145.6 215 52.6
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 7.1e-32 143.3 215 52.6
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 7.1e-32 143.3 150 54.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.1e-31 141.7 215 52.1
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 5.1e-30 137.1 245 46.9
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 6.7e-30 136.7 240 49.6
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.5e-29 135.6 115 60.9
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 2.8e-28 131.3 577 44.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.2e-26 125.9 236 48.7
A05p29490 Brassica napus HOM05D006707 ORTHO05D008243 6.7e-22 110.2 66 72.7
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.2e-18 99.4 231 33.8
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.1e-16 92.8 119 60.5
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.1e-16 92.8 119 60.5
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 4.2e-16 90.9 138 37.0
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 4.2e-16 90.9 68 70.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.7e-15 88.2 220 29.1
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 7.4e-13 80.1 155 36.1
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.9e-10 70.5 38 78.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.7e-09 68.9 132 34.1
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 5.0e-09 67.4 229 27.1
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 1.5e-08 65.9 171 29.8
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 2.5e-08 65.1 38 76.3
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.2e-08 64.7 38 65.8
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 5.5e-08 63.9 38 73.7
arahy.Tifrunner.gnm1.ann1.1MD03I Arachis hypogaea HOM05D006707 ORTHO05D008243 7.2e-08 63.5 40 70.0
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 7.2e-08 63.5 40 70.0
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 7.2e-08 63.5 38 63.2
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 1.2e-07 62.8 126 33.3
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 2.3e-06 58.5 38 68.4
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 3.0e-06 58.2 145 26.2
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 5.2e-06 57.4 145 26.2
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 6.7e-06 57.0 34 76.5
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 6.7e-06 57.0 32 81.2
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 6.7e-06 57.0 145 26.2
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 8.8e-06 56.6 117 29.1


User provided reference genes

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