Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.187 Carica papaya HOM05D003018 ORTHO05D003402 1.2e-68 263.1 140 100.0
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 1.3e-46 189.9 138 73.9
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 3.9e-46 188.3 140 70.7
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.1e-45 186.8 138 72.5
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.1e-45 186.8 138 72.5
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.5e-45 186.4 138 71.7
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 4.7e-44 181.4 140 67.9
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 8.1e-44 180.6 140 69.3
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 1.1e-43 180.3 140 69.3
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 1.4e-43 179.9 129 71.3
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 1.4e-43 179.9 133 69.9
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 1.8e-43 179.5 139 68.3
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 2.4e-43 179.1 133 69.9
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 3.1e-43 178.7 133 69.9
Gohir.D09G181900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 6.9e-43 177.6 142 66.2
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 8.9e-43 177.2 126 74.6
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 8.9e-43 177.2 118 78.0
COL.COLO4_14400 Corchorus olitorius HOM05D003018 ORTHO05D003402 2.0e-42 176.0 118 73.7
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 4.4e-42 174.9 126 73.8
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 4.4e-42 174.9 141 66.0
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 5.8e-42 174.5 141 67.4
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 5.8e-42 174.5 131 67.2
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 7.6e-42 174.1 144 67.4
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 9.9e-42 173.7 139 67.6
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 1.3e-41 173.3 140 67.1
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 1.7e-41 172.9 118 72.9
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 2.2e-41 172.6 126 72.2
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 3.8e-41 171.8 117 74.4
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 3.8e-41 171.8 131 69.5
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 4.9e-41 171.4 132 66.7
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 4.9e-41 171.4 139 65.5
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 6.4e-41 171.0 138 64.5
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 8.4e-41 170.6 132 66.7
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 1.1e-40 170.2 127 67.7
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 1.1e-40 170.2 127 67.7
ClCG01G000020 Citrullus lanatus HOM05D003018 ORTHO05D003402 1.4e-40 169.9 132 66.7
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 1.4e-40 169.9 119 75.6
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.9e-40 169.5 119 72.3
Gorai.007G017700 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.9e-40 169.5 119 72.3
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 3.2e-40 168.7 132 65.2
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 3.2e-40 168.7 119 72.3
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 4.2e-40 168.3 131 69.5
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 4.2e-40 168.3 132 67.4
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 4.2e-40 168.3 128 66.4
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 7.1e-40 167.5 126 65.1
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 9.3e-40 167.2 119 72.3
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 1.2e-39 166.8 127 66.1
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.2e-39 166.8 124 64.5
Lsat_1_v5_gn_2_135421 Lactuca sativa HOM05D003018 ORTHO05D003402 1.2e-39 166.8 131 64.9
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 1.2e-39 166.8 131 66.4
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.6e-39 166.4 143 65.7
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.6e-39 166.4 143 65.7
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.6e-39 166.4 124 64.5
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 1.6e-39 166.4 133 66.9
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 3.5e-39 165.2 122 70.5
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 3.5e-39 165.2 134 64.9
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 3.5e-39 165.2 135 64.4
CDE02G1646 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 6.0e-39 164.5 117 70.1
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 6.0e-39 164.5 117 70.9
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 7.8e-39 164.1 134 60.4
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 7.8e-39 164.1 134 62.7
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 1.0e-38 163.7 116 70.7
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 1.0e-38 163.7 143 61.5
Lalb_Chr08g0239411 Lupinus albus HOM05D003018 ORTHO05D003402 1.0e-38 163.7 146 60.3
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 1.3e-38 163.3 134 63.4
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 1.7e-38 162.9 118 69.5
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 2.3e-38 162.5 134 64.2
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.3e-38 162.5 134 60.4
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 2.3e-38 162.5 131 64.9
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 3.0e-38 162.2 117 68.4
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 3.0e-38 162.2 129 67.4
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 3.9e-38 161.8 131 64.9
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 3.9e-38 161.8 131 64.9
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 5.1e-38 161.4 124 64.5
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 5.1e-38 161.4 119 69.7
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 5.1e-38 161.4 131 64.9
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 6.6e-38 161.0 136 64.7
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 6.6e-38 161.0 131 65.6
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 1.1e-37 160.2 139 61.2
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 1.5e-37 159.8 145 60.0
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 3.3e-37 158.7 126 65.1
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 5.6e-37 157.9 117 63.2
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 1.3e-36 156.8 139 57.6
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 1.6e-36 156.4 131 62.6
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 1.6e-36 156.4 124 65.3
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 1.6e-36 156.4 119 68.1
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 6.2e-36 154.5 130 64.6
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 6.2e-36 154.5 132 62.9
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 8.1e-36 154.1 130 64.6
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 1.1e-35 153.7 134 59.0
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 5.3e-35 151.4 119 64.7
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 9.9e-34 147.1 119 62.2
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 9.9e-34 147.1 135 55.6
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 1.3e-33 146.7 119 61.3
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 1.3e-33 146.7 135 54.8
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 1.7e-33 146.4 119 61.3
Psat1g196200 Pisum sativum HOM05D003018 ORTHO05D003402 1.7e-33 146.4 142 56.3
Psat6g092160 Pisum sativum HOM05D003018 ORTHO05D003402 1.7e-33 146.4 142 56.3
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 2.2e-33 146.0 123 59.3
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 2.2e-33 146.0 123 59.3
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 2.9e-33 145.6 119 60.5
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 2.9e-33 145.6 119 60.5
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 2.9e-33 145.6 139 56.8
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 3.8e-33 145.2 119 60.5
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 4.9e-33 144.8 136 55.9
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 8.4e-33 144.1 133 54.1
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 1.1e-32 143.7 131 57.3
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 2.4e-32 142.5 136 57.4
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 3.2e-32 142.1 139 54.7
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 3.2e-32 142.1 139 54.7
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 3.2e-32 142.1 120 60.0
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 3.2e-32 142.1 120 60.0
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 4.2e-32 141.7 140 55.7
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 1.2e-31 140.2 139 54.7
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 1.2e-31 140.2 139 54.7
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 2.1e-31 139.4 119 59.7
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 2.1e-31 139.4 136 55.1
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 2.7e-31 139.0 119 60.5
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 3.5e-31 138.7 131 56.5
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 3.5e-31 138.7 139 54.0
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 3.5e-31 138.7 119 59.7
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 4.6e-31 138.3 139 53.2
CSS0003954 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 6.0e-31 137.9 124 63.7
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 1.0e-30 137.1 139 52.5
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 3.9e-30 135.2 142 52.1
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 5.1e-30 134.8 92 73.9
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 1.1e-29 133.7 142 56.3
Lsat_1_v5_gn_8_4220 Lactuca sativa HOM05D003018 ORTHO05D003402 1.9e-29 132.9 124 55.6
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 1.9e-29 132.9 118 55.9
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 8.1e-28 127.5 117 53.8
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 1.4e-27 126.7 126 54.0
HanXRQChr15g0497021 Helianthus annuus HOM05D003018 ORTHO05D003402 3.1e-27 125.6 117 55.6
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 4.0e-27 125.2 140 52.9
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 5.3e-27 124.8 118 56.8
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 6.9e-27 124.4 131 52.7
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 3.4e-26 122.1 123 53.7
AagrBONN_evm.TU.Sc2ySwM_344.126 Anthoceros agrestis HOM05D003018 ORTHO05D003402 7.6e-26 120.9 114 52.6
Os02g0526500 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 1.3e-25 120.2 119 52.9
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 2.2e-25 119.4 130 51.5
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 2.9e-25 119.0 150 48.0
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 1.9e-24 116.3 117 53.0
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 3.2e-24 115.5 123 51.2
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 3.2e-24 115.5 140 50.0
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 3.0e-22 109.0 141 45.4
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 1.5e-21 106.7 74 70.3
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 1.6e-20 103.2 120 48.3
AUR62030652 Chenopodium quinoa HOM05D003018 ORTHO05D003402 1.0e-17 94.0 72 65.3
PSO675G3559 Papaver somniferum HOM05D003018 ORTHO05D003402 3.8e-17 92.0 120 46.7
ECA248G1111 Erigeron canadensis HOM05D001208 ORTHO05D001593 1.4e-16 90.1 130 39.2
ECA248G2250 Erigeron canadensis HOM05D003018 ORTHO05D003402 1.9e-16 89.7 132 39.4
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 1.2e-15 87.0 92 51.1
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 4.6e-15 85.1 46 89.1
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 1.0e-14 84.0 46 84.8
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-14 83.2 116 37.9
PSO724G0429 Papaver somniferum HOM05D003018 ORTHO05D003402 1.6e-12 76.6 121 38.0
ECA248G0015 Erigeron canadensis HOM05D003018 ORTHO05D003402 2.1e-12 76.3 134 35.1
Pp3c16_18310 Physcomitrium patens HOM05D025156 ORTHO05D003402 2.8e-12 75.9 85 47.1
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 3.7e-12 75.5 121 37.2
PSO339G6351 Papaver somniferum HOM05D003018 ORTHO05D003402 1.1e-11 73.9 132 34.8
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 1.8e-11 73.2 39 82.1
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 6.9e-11 71.2 69 53.6
PSO832G4292 Papaver somniferum HOM05D003018 ORTHO05D003402 9.0e-11 70.9 110 39.1
PSO782G4498 Papaver somniferum HOM05D003018 ORTHO05D003402 1.2e-10 70.5 143 36.4
PSO339G5543 Papaver somniferum HOM05D003018 ORTHO05D003402 3.4e-10 68.9 128 33.6
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 3.4e-10 68.9 45 68.9
unitig_62.g23858 Utricularia gibba HOM05D003018 ORTHO05D003402 1.7e-09 66.6 45 75.6
unitig_64.g29777 Utricularia gibba HOM05D003018 ORTHO05D003402 1.7e-09 66.6 45 75.6
MCO01G667 Micromonas commoda HOM05D003018 ORTHO05D003402 2.9e-09 65.9 108 33.3
ECA232G1833 Erigeron canadensis HOM05D000455 ORTHO05D000434 1.4e-08 63.5 143 31.5
Zm00001eb187080 Zea mays HOM05D003018 ORTHO05D003402 3.2e-08 62.4 74 44.6
SEGI_07138 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 2.7e-07 59.3 81 42.0
PRCOL_00000888 Prasinoderma coloniale HOM05D003018 ORTHO05D003402 3.6e-07 58.9 135 29.6
HanXRQChr01g0012351 Helianthus annuus HOM05D003018 ORTHO05D003402 1.8e-06 56.6 109 32.1


User provided reference genes

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