Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2900.2 Carica papaya HOM05D000709 ORTHO05D116641 4.4e-75 284.6 154 100.0
MD17G1023100 Malus domestica HOM05D000709 ORTHO05D002401 3.2e-25 119.0 124 47.6
MD09G1023600 Malus domestica HOM05D000709 ORTHO05D002401 8.7e-23 110.9 124 46.8
Dinv25729 Davidia involucrata HOM05D000709 ORTHO05D002401 3.3e-22 109.0 133 47.4
Dinv33430 Davidia involucrata HOM05D000709 ORTHO05D002401 1.6e-21 106.7 144 42.4
TAR629G0185 Trochodendron aralioides HOM05D000709 ORTHO05D002401 6.2e-21 104.8 135 43.0
Thecc.04G018900 Theobroma cacao HOM05D000709 ORTHO05D002401 8.1e-21 104.4 131 44.3
QL02p074118 Quercus lobata HOM05D000709 ORTHO05D002401 1.1e-20 104.0 129 45.7
TAR371G1112 Trochodendron aralioides HOM05D000709 ORTHO05D001191 1.1e-20 104.0 135 43.0
Potri.001G343800 Populus trichocarpa HOM05D000709 ORTHO05D002401 3.1e-20 102.4 137 42.3
Gorai.006G034600 Gossypium raimondii HOM05D000709 ORTHO05D002401 2.0e-19 99.8 124 46.8
CSS0007516 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 4.4e-19 98.6 145 40.0
Gohir.D09G029600 Gossypium hirsutum HOM05D000709 ORTHO05D002401 4.4e-19 98.6 124 46.0
Lalb_Chr14g0362861 Lupinus albus HOM05D000709 ORTHO05D002401 7.6e-19 97.8 134 43.3
Gohir.A09G029900 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.3e-18 97.1 124 45.2
Haze_14755 Corylus avellana HOM05D000709 ORTHO05D001191 1.7e-18 96.7 94 48.9
CSS0014040 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 6.4e-18 94.7 144 39.6
CSS0047573 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 6.4e-18 94.7 144 39.6
Duzib147G1358 Durio zibethinus HOM05D000709 ORTHO05D002401 6.4e-18 94.7 124 43.5
Glyma.19G056400 Glycine max HOM05D000709 ORTHO05D002401 6.4e-18 94.7 139 41.0
CiPaw.03G045200 Carya illinoinensis HOM05D000709 ORTHO05D002401 8.4e-18 94.4 128 42.2
Prupe.3G293200 Prunus persica HOM05D000709 ORTHO05D002401 8.4e-18 94.4 122 45.1
Phvul.008G159200 Phaseolus vulgaris HOM05D000709 ORTHO05D002401 1.4e-17 93.6 136 39.7
Manes.15G151500 Manihot esculenta HOM05D000709 ORTHO05D002401 1.9e-17 93.2 125 39.2
Sed0007126 Sechium edule HOM05D000709 ORTHO05D002401 4.2e-17 92.0 125 43.2
vmacro05873 Vaccinium macrocarpon HOM05D000709 ORTHO05D426983 4.2e-17 92.0 132 40.2
CiPaw.04G029400 Carya illinoinensis HOM05D000709 ORTHO05D001191 7.1e-17 91.3 136 39.7
Ciclev10015507m.g Citrus clementina HOM05D000709 ORTHO05D002401 1.2e-16 90.5 123 43.9
Lj7A600T54 Lonicera japonica HOM05D000709 ORTHO05D002401 1.2e-16 90.5 129 43.4
Lj2g0020477 Lotus japonicus HOM05D000709 ORTHO05D002401 1.2e-16 90.5 133 39.8
Manes.17G111400 Manihot esculenta HOM05D000709 ORTHO05D002401 1.2e-16 90.5 130 43.1
Gorai.007G075300 Gossypium raimondii HOM05D000709 ORTHO05D002401 2.1e-16 89.7 141 39.0
TWI36G0988 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 2.7e-16 89.4 142 38.0
ClCG09G019340 Citrullus lanatus HOM05D000709 ORTHO05D002401 3.5e-16 89.0 126 40.5
Solyc02g093420.4 Solanum lycopersicum HOM05D000709 ORTHO05D002401 3.5e-16 89.0 127 39.4
Hma1.2p1_0818F.1_g223250 Hydrangea macrophylla HOM05D000709 ORTHO05D002401 4.6e-16 88.6 131 38.9
GSVIVG01032388001 Vitis vinifera HOM05D000709 ORTHO05D002401 6.0e-16 88.2 129 39.5
MELO3C021587.2 Cucumis melo HOM05D000709 ORTHO05D002401 1.3e-15 87.0 123 42.3
Gohir.D11G070200 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.3e-15 87.0 141 39.0
Hma1.2p1_1747F.1_g300510 Hydrangea macrophylla HOM05D000709 ORTHO05D002401 1.3e-15 87.0 127 37.0
CAN.G473.18 Capsicum annuum HOM05D000709 ORTHO05D002401 1.7e-15 86.7 141 37.6
Hund12959 Selenicereus undatus HOM05D000709 ORTHO05D002401 1.7e-15 86.7 135 38.5
VMungo1383G0049 Vigna mungo HOM05D000709 ORTHO05D002401 1.7e-15 86.7 93 47.3
PGSC0003DMG400012607 Solanum tuberosum HOM05D000709 ORTHO05D002401 2.3e-15 86.3 131 38.2
Sabra16G0223100 Salix brachista HOM05D000709 ORTHO05D002401 3.9e-15 85.5 132 39.4
Sopen02g038010 Solanum pennellii HOM05D000709 ORTHO05D002401 3.9e-15 85.5 127 38.6
Atru.chr6.2420 Acer truncatum HOM05D000709 ORTHO05D002401 5.1e-15 85.1 141 36.9
Cc07_g01550 Coffea canephora HOM05D000709 ORTHO05D002401 5.1e-15 85.1 148 35.1
Peaxi162Scf00129g01666 Petunia axillaris HOM05D000709 ORTHO05D002401 5.1e-15 85.1 131 38.9
Sc16g0004360 Simmondsia chinensis HOM05D000709 ORTHO05D002401 5.1e-15 85.1 136 36.8
Sed0023923 Sechium edule HOM05D000709 ORTHO05D002401 1.1e-14 84.0 139 38.1
CsaV3_5G027070 Cucumis sativus L. HOM05D000709 ORTHO05D002401 1.9e-14 83.2 123 41.5
TWI56G0359 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 2.5e-14 82.8 150 36.7
RcHm_v2.0_Chr2g0173191 Rosa chinensis HOM05D000709 ORTHO05D002401 3.3e-14 82.4 148 35.1
Glyma.05G002700 Glycine max HOM05D000709 ORTHO05D002401 4.3e-14 82.0 123 42.3
MBI10_g03015_MAGBIO Magnolia biondii HOM05D000709 ORTHO05D002401 7.3e-14 81.3 132 37.1
Rhsim10G0014900 Rhododendron simsii HOM05D000709 ORTHO05D002401 7.3e-14 81.3 128 36.7
Duzib264G0107 Durio zibethinus HOM05D000709 ORTHO05D002401 1.6e-13 80.1 130 40.0
Glyma.16G069300 Glycine max HOM05D000709 ORTHO05D002401 1.6e-13 80.1 135 36.3
Duzib187G0744 Durio zibethinus HOM05D000709 ORTHO05D002401 2.8e-13 79.3 123 39.0
Nn3g16695 Nelumbo nucifera HOM05D000709 ORTHO05D002401 4.8e-13 78.6 132 34.8
Rhsim08G0048500 Rhododendron simsii HOM05D000709 ORTHO05D002401 6.2e-13 78.2 142 35.2
VMungo0464G1772 Vigna mungo HOM05D000709 ORTHO05D002401 6.2e-13 78.2 123 41.5
Gohir.A11G066000 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.1e-12 77.4 92 44.6
Lj1g0014205 Lotus japonicus HOM05D000709 ORTHO05D002401 1.4e-12 77.0 135 37.0
DCAR_021729 Daucus carota HOM05D000709 ORTHO05D001191 6.9e-12 74.7 123 35.8
FvH4_6g51660 Fragaria vesca HOM05D000709 ORTHO05D002401 6.9e-12 74.7 148 32.4
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 6.9e-12 74.7 148 31.8
Actinidia35777 Actinidia chinensis HOM05D000709 ORTHO05D002401 1.2e-11 73.9 133 35.3
COL.COLO4_29168 Corchorus olitorius HOM05D000709 ORTHO05D001191 1.2e-11 73.9 132 35.6
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.2e-11 73.9 148 31.8
MSTRG.24044 Avicennia marina HOM05D000709 ORTHO05D002401 1.5e-11 73.6 146 34.9
Eucgr.J02254 Eucalyptus grandis HOM05D000709 ORTHO05D002401 1.5e-11 73.6 127 36.2
Phvul.004G004900 Phaseolus vulgaris HOM05D000709 ORTHO05D002401 2.6e-11 72.8 122 39.3
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.4e-11 72.4 147 32.0
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.8e-11 71.6 148 31.1
Glyma.19G002900 Glycine max HOM05D000709 ORTHO05D002401 1.3e-10 70.5 135 37.0
Oeu048610.1 Olea europaea HOM05D000709 ORTHO05D002401 1.3e-10 70.5 140 30.7
Lsat_1_v5_gn_2_91301 Lactuca sativa HOM05D000709 ORTHO05D002401 2.9e-10 69.3 104 40.4
HanXRQChr14g0451181 Helianthus annuus HOM05D000709 ORTHO05D002401 3.8e-10 68.9 129 35.7
HanXRQChr17g0548601 Helianthus annuus HOM05D000709 ORTHO05D002401 3.8e-10 68.9 101 42.6
arahy.Tifrunner.gnm1.ann1.K4491K Arachis hypogaea HOM05D000709 ORTHO05D002401 4.9e-10 68.6 144 32.6
arahy.Tifrunner.gnm1.ann1.7J37F0 Arachis hypogaea HOM05D000709 ORTHO05D002401 6.4e-10 68.2 81 42.0
ECA238G2453 Erigeron canadensis HOM05D000709 ORTHO05D002401 6.4e-10 68.2 89 40.4
HanXRQChr07g0199011 Helianthus annuus HOM05D000709 ORTHO05D002401 6.4e-10 68.2 129 36.4
Lsat_1_v5_gn_0_32180 Lactuca sativa HOM05D000709 ORTHO05D002401 8.4e-10 67.8 91 41.8
Oeu041357.2 Olea europaea HOM05D000709 ORTHO05D002401 1.1e-09 67.4 140 29.3
HanXRQChr16g0519011 Helianthus annuus HOM05D000709 ORTHO05D002401 1.4e-09 67.0 101 40.6
SGA_v2.0_scaffold47G17505 Striga asiatica HOM05D000709 ORTHO05D002401 1.9e-09 66.6 149 28.9
HPP92_024274 Vanilla planifolia HOM05D000709 ORTHO05D002401 1.9e-09 66.6 129 34.9
EL10Ac1g00168 Beta vulgaris HOM05D000709 ORTHO05D002401 3.2e-09 65.9 131 32.8
SalBow7G2204 Salvia bowleyana HOM05D000709 ORTHO05D002401 3.2e-09 65.9 132 28.8
arahy.Tifrunner.gnm1.ann1.JHHH6T Arachis hypogaea HOM05D000709 ORTHO05D002401 4.2e-09 65.5 144 32.6
ECA246G4459 Erigeron canadensis HOM05D000709 ORTHO05D002401 4.2e-09 65.5 96 36.5
ATR0824G174 Amborella trichopoda HOM05D000709 ORTHO05D002401 5.5e-09 65.1 61 49.2
EL10Ac6g14495 Beta vulgaris HOM05D000709 ORTHO05D002401 9.3e-09 64.3 71 45.1
Gohir.A12G170500 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.6e-08 63.5 73 47.9
Gohir.D12G173700 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.6e-08 63.5 73 47.9
Gorai.008G186300 Gossypium raimondii HOM05D000709 ORTHO05D002401 1.6e-08 63.5 73 47.9
TWI12G1062 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 1.6e-08 63.5 147 31.3
Os02g0594800 Oryza sativa ssp. japonica HOM05D000709 ORTHO05D002401 2.1e-08 63.2 120 33.3
TPR.G1138 Trifolium pratense HOM05D000709 ORTHO05D002401 2.7e-08 62.8 136 33.1
PSO782G4918 Papaver somniferum HOM05D000709 ORTHO05D002401 4.6e-08 62.0 98 36.7
BcaC01g04528 Brassica carinata HOM05D000709 ORTHO05D002401 6.0e-08 61.6 129 35.7
ECA246G2234 Erigeron canadensis HOM05D000709 ORTHO05D002401 6.0e-08 61.6 130 31.5
Glyma.10G204700 Glycine max HOM05D000709 ORTHO05D002401 6.0e-08 61.6 150 34.0
Glyma.20G185800 Glycine max HOM05D000709 ORTHO05D002401 6.0e-08 61.6 151 32.5
Solyc05g009840.3 Solanum lycopersicum HOM05D000709 ORTHO05D002401 6.0e-08 61.6 99 36.4
Sopen05g005650 Solanum pennellii HOM05D000709 ORTHO05D002401 6.0e-08 61.6 99 36.4
PGSC0003DMG400000809 Solanum tuberosum HOM05D000709 ORTHO05D002401 6.0e-08 61.6 99 36.4
Cc11_g10610 Coffea canephora HOM05D000709 ORTHO05D002401 7.9e-08 61.2 86 40.7
PSO063G7345 Papaver somniferum HOM05D000709 ORTHO05D002401 7.9e-08 61.2 73 42.5
Ah.05g178850 Amaranthus hybridus HOM05D000709 ORTHO05D001675 1.0e-07 60.8 109 33.9
CANSAT64G0607 Cannabis sativa HOM05D000709 ORTHO05D002401 1.0e-07 60.8 139 34.5
AUR62022685 Chenopodium quinoa HOM05D000709 ORTHO05D002401 1.0e-07 60.8 132 34.8
vmacro18292 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 1.0e-07 60.8 137 32.8
SEGI_26026 Sequoiadendron giganteum HOM05D000709 ORTHO05D001136 1.3e-07 60.5 127 36.2
SEGI_30821 Sequoiadendron giganteum HOM05D000709 ORTHO05D001136 1.3e-07 60.5 127 36.2
MSTRG.7689 Avicennia marina HOM05D000709 ORTHO05D002401 1.8e-07 60.1 111 38.7
Thecc.02G361300 Theobroma cacao HOM05D000709 ORTHO05D002401 1.8e-07 60.1 73 46.6
Duzib251G0863 Durio zibethinus HOM05D000709 ORTHO05D002401 2.3e-07 59.7 73 47.9
Nitab4.5_0011178g0010 Nicotiana tabacum HOM05D000709 ORTHO05D002401 2.3e-07 59.7 71 45.1
AUR62004572 Chenopodium quinoa HOM05D000709 ORTHO05D002401 3.0e-07 59.3 85 40.0
PGR119G0617 Punica granatum HOM05D000709 ORTHO05D002401 3.0e-07 59.3 113 36.3
CsaV3_5G033980 Cucumis sativus L. HOM05D000709 ORTHO05D002401 3.9e-07 58.9 82 46.3
Duzib248G0470 Durio zibethinus HOM05D000709 ORTHO05D002401 3.9e-07 58.9 73 46.6
Sed0020682 Sechium edule HOM05D000709 ORTHO05D002401 3.9e-07 58.9 83 44.6
TWI31G0592 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 3.9e-07 58.9 101 41.6
HPP92_020248 Vanilla planifolia HOM05D000709 ORTHO05D002401 3.9e-07 58.9 70 42.9
Carub.0003s0046 Capsella rubella HOM05D000709 ORTHO05D002401 5.1e-07 58.5 84 45.2
COL.COLO4_07867 Corchorus olitorius HOM05D000709 ORTHO05D002401 5.1e-07 58.5 73 45.2
Manes.06G072300 Manihot esculenta HOM05D000709 ORTHO05D002401 5.1e-07 58.5 71 45.1
ClCG05G023020 Citrullus lanatus HOM05D000709 ORTHO05D002401 6.7e-07 58.2 82 46.3
CARHR198820 Cardamine hirsuta HOM05D000709 ORTHO05D002401 8.7e-07 57.8 147 34.0
MD16G1048300 Malus domestica HOM05D000709 ORTHO05D002401 8.7e-07 57.8 107 38.3
Haze_17441 Corylus avellana HOM05D000709 ORTHO05D002401 1.5e-06 57.0 100 42.0
MD13G1046600 Malus domestica HOM05D000709 ORTHO05D002401 1.5e-06 57.0 78 44.9
Medtr1g093680 Medicago truncatula HOM05D000709 ORTHO05D002401 1.5e-06 57.0 100 36.0
Potri.008G116600 Populus trichocarpa HOM05D000709 ORTHO05D002401 1.5e-06 57.0 71 46.5
Potri.010G129700 Populus trichocarpa HOM05D000709 ORTHO05D002401 1.5e-06 57.0 69 43.5
Sp6g29520 Schrenkiella parvula HOM05D000709 ORTHO05D002401 1.5e-06 57.0 112 36.6
CAN.G184.90 Capsicum annuum HOM05D000709 ORTHO05D002401 1.9e-06 56.6 86 39.5
Ciclev10031598m.g Citrus clementina HOM05D000709 ORTHO05D002401 1.9e-06 56.6 129 34.1
Lsat_1_v5_gn_3_57981 Lactuca sativa HOM05D000709 ORTHO05D002401 1.9e-06 56.6 73 41.1
Nitab4.5_0008922g0020 Nicotiana tabacum HOM05D000709 ORTHO05D002401 1.9e-06 56.6 71 42.3
Peaxi162Scf00380g00219 Petunia axillaris HOM05D000709 ORTHO05D002401 1.9e-06 56.6 72 43.1
Sabra08G0088400 Salix brachista HOM05D000709 ORTHO05D002401 1.9e-06 56.6 71 46.5
SEGI_32083 Sequoiadendron giganteum HOM05D000709 ORTHO05D002401 1.9e-06 56.6 83 45.8
CiPaw.15G003500 Carya illinoinensis HOM05D000709 ORTHO05D002401 2.5e-06 56.2 72 45.8
HanXRQChr12g0386181 Helianthus annuus HOM05D000709 ORTHO05D002401 2.5e-06 56.2 71 43.7
Nn4g22597 Nelumbo nucifera HOM05D000709 ORTHO05D002401 2.5e-06 56.2 135 34.8
vmacro01365 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 2.5e-06 56.2 71 42.3
A03p32470 Brassica napus HOM05D000669 ORTHO05D000679 3.3e-06 55.8 129 33.3
BraA03t12416Z Brassica rapa HOM05D000669 ORTHO05D000679 3.3e-06 55.8 129 33.3
Ca_13563_v3 Cicer arietinum L. HOM05D000709 ORTHO05D002401 3.3e-06 55.8 135 31.1
Thhalv10022099m.g Eutrema salsugineum HOM05D000709 ORTHO05D002401 3.3e-06 55.8 106 34.9
HanXRQChr17g0552261 Helianthus annuus HOM05D000709 ORTHO05D002401 3.3e-06 55.8 71 42.3
Nitab4.5_0004122g0040 Nicotiana tabacum HOM05D000709 ORTHO05D002401 3.3e-06 55.8 71 43.7
Psat0s2763g0040 Pisum sativum HOM05D000709 ORTHO05D002401 3.3e-06 55.8 70 45.7
Prupe.1G305300 Prunus persica HOM05D000709 ORTHO05D002401 3.3e-06 55.8 71 46.5
Rhsim12G0081600 Rhododendron simsii HOM05D000709 ORTHO05D002401 3.3e-06 55.8 71 40.8
Atru.chr11.1354 Acer truncatum HOM05D000709 ORTHO05D002401 4.3e-06 55.5 71 46.5
Aa31LG5G10750 Aethionema arabicum HOM05D000709 ORTHO05D002401 4.3e-06 55.5 86 43.0
Oeu042026.1 Olea europaea HOM05D000709 ORTHO05D002401 4.3e-06 55.5 103 33.0
Sabra10G0098700 Salix brachista HOM05D000709 ORTHO05D002401 4.3e-06 55.5 70 44.3
THA.LOC104803078 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 4.3e-06 55.5 100 39.0
MELO3C012215.2 Cucumis melo HOM05D000709 ORTHO05D002401 5.6e-06 55.1 82 43.9
Dinv16506 Davidia involucrata HOM05D000709 ORTHO05D002401 5.6e-06 55.1 71 43.7
Ah.03g137940 Amaranthus hybridus HOM05D000709 ORTHO05D002401 7.4e-06 54.7 74 41.9
AL3G10550 Arabidopsis lyrata HOM05D000709 ORTHO05D002401 7.4e-06 54.7 88 44.3
Eucgr.G02349 Eucalyptus grandis HOM05D000709 ORTHO05D002401 7.4e-06 54.7 73 43.8
PGR142G2071 Punica granatum HOM05D000709 ORTHO05D002401 7.4e-06 54.7 120 36.7
TAR371G0746 Trochodendron aralioides HOM05D000709 ORTHO05D002401 7.4e-06 54.7 70 41.4
TAR374G1466 Trochodendron aralioides HOM05D000709 ORTHO05D002401 7.4e-06 54.7 68 41.2
Aqoxy3G01235 Aquilegia oxysepala HOM05D000709 ORTHO05D002401 9.6e-06 54.3 156 29.5
Nitab4.5_0001860g0040 Nicotiana tabacum HOM05D000709 ORTHO05D002401 9.6e-06 54.3 81 34.6
THA.LOC104821092 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 9.6e-06 54.3 84 42.9


User provided reference genes

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