Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.2e-155 553.1 277 100.0
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.5e-121 439.9 240 87.9
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 7.3e-121 437.6 240 87.5
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 3.6e-120 435.3 240 87.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 6.2e-120 434.5 240 87.5
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.0e-120 434.1 240 86.7
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 8.0e-120 434.1 240 86.7
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.0e-119 433.7 240 85.8
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.2e-119 431.4 240 85.4
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 8.9e-119 430.6 240 87.1
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.2e-118 430.3 240 87.1
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.9e-117 425.6 240 85.8
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 2.9e-117 425.6 240 85.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.3e-117 424.1 240 85.8
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.4e-116 422.5 239 85.8
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.4e-116 422.5 240 85.0
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.1e-116 421.8 240 85.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 2.7e-115 419.1 240 82.5
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.5e-115 418.7 240 82.5
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.5e-115 418.7 239 84.1
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 6.0e-115 417.9 240 83.3
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 6.0e-115 417.9 240 82.1
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 6.0e-115 417.9 240 82.1
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 1.7e-114 416.4 240 85.0
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 5.0e-114 414.8 240 82.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 5.0e-114 414.8 240 82.9
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 6.6e-114 414.5 240 82.1
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.1e-113 413.7 240 82.5
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.5e-113 413.3 240 82.5
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.9e-113 412.9 240 84.6
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 3.3e-113 412.1 240 81.7
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 4.3e-113 411.8 240 82.9
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 4.3e-113 411.8 240 81.2
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 5.6e-113 411.4 240 84.6
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.6e-112 409.8 258 79.5
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 2.1e-112 409.5 251 78.5
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.1e-112 409.5 239 84.9
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 2.8e-112 409.1 240 82.5
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 3.6e-112 408.7 240 80.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 3.6e-112 408.7 240 81.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 8.1e-112 407.5 240 81.2
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.1e-111 407.1 240 81.7
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.8e-111 406.4 240 80.0
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 2.3e-111 406.0 240 81.2
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 2.3e-111 406.0 240 80.4
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 4.0e-111 405.2 240 81.7
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 6.8e-111 404.4 240 80.8
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 8.9e-111 404.1 240 80.4
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.2e-110 403.7 239 77.8
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.2e-110 403.7 240 81.7
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 4.4e-110 401.7 240 80.4
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.4e-110 401.7 240 81.2
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.5e-110 401.0 240 79.2
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 2.9e-109 399.1 241 82.2
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.9e-109 398.3 240 78.3
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.4e-108 396.7 240 80.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.4e-108 396.7 269 75.1
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.9e-108 396.4 240 77.9
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.9e-108 396.4 240 77.9
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.4e-108 394.8 240 78.3
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 7.1e-108 394.4 240 78.8
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 9.2e-108 394.0 240 77.5
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-107 393.7 244 77.9
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.5e-107 392.1 240 77.5
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.6e-107 391.7 241 77.6
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 6.0e-107 391.3 241 77.2
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.3e-106 390.2 241 80.1
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-106 390.2 241 80.1
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.7e-106 389.8 241 80.5
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.3e-106 389.4 241 79.3
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 2.3e-106 389.4 239 76.2
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.1e-106 388.3 240 76.2
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 6.6e-106 387.9 240 74.6
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 8.6e-106 387.5 240 73.8
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.5e-105 386.7 240 75.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 3.3e-105 385.6 243 79.4
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 3.3e-105 385.6 240 77.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 4.3e-105 385.2 241 79.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 7.3e-105 384.4 240 76.7
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 7.3e-105 384.4 240 76.7
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 9.5e-105 384.0 250 74.4
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.2e-104 383.6 241 79.3
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.8e-104 382.5 251 76.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.8e-104 382.5 240 78.3
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 3.6e-104 382.1 251 77.3
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 6.2e-104 381.3 251 76.9
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 6.2e-104 381.3 239 75.7
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.4e-103 380.2 241 78.4
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 3.1e-103 379.0 240 76.2
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.0e-103 378.6 299 64.9
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 6.8e-103 377.9 241 78.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 6.8e-103 377.9 240 75.0
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 8.9e-103 377.5 240 74.2
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.2e-102 377.1 246 74.0
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.0e-102 376.3 251 75.7
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.0e-102 376.3 235 75.7
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.6e-102 375.9 251 75.7
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.6e-102 375.9 240 73.8
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.4e-102 375.6 251 75.7
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 5.8e-102 374.8 240 76.2
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.8e-102 374.8 241 75.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 7.6e-102 374.4 251 76.9
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 7.6e-102 374.4 240 77.5
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.7e-101 373.2 251 76.5
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 2.2e-101 372.9 241 77.6
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.2e-101 372.9 246 73.6
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.9e-101 372.5 251 76.1
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.9e-101 372.5 251 76.5
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.1e-100 370.5 240 76.2
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.4e-100 369.4 285 67.4
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 3.2e-100 369.0 251 75.7
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 7.1e-100 367.9 251 75.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.6e-99 366.7 243 76.5
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 2.7e-99 365.9 251 75.3
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 4.6e-99 365.2 244 71.3
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 6.0e-99 364.8 246 75.6
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 8.6e-98 360.9 240 70.8
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 8.6e-98 360.9 232 75.0
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 3.6e-96 355.5 247 74.1
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 8.1e-96 354.4 240 75.0
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.4e-95 353.6 240 72.1
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 4.0e-95 352.1 271 65.3
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 5.2e-95 351.7 242 75.6
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 5.2e-95 351.7 242 75.6
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 6.8e-95 351.3 244 68.4
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 9.9e-94 347.4 240 66.2
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 9.9e-94 347.4 240 66.2
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.2e-93 346.3 239 73.6
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 6.4e-93 344.7 198 83.8
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.4e-93 344.4 251 66.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.4e-92 343.6 268 64.6
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 7.1e-92 341.3 241 69.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.2e-91 340.5 247 68.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.6e-90 334.7 242 72.3
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 5.6e-89 331.6 248 66.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 7.3e-89 331.3 204 75.5
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-88 330.1 208 76.4
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-87 327.4 264 61.4
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 9.0e-87 324.3 198 76.8
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.5e-81 306.2 241 66.0
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 5.6e-81 305.1 227 71.4
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.1e-80 303.1 299 56.2
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 3.6e-80 302.4 241 58.9
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 9.3e-76 287.7 240 61.7
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 7.1e-68 261.5 223 64.6
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 6.0e-67 258.5 233 57.1
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 3.1e-63 246.1 198 57.1
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 2.0e-62 243.4 212 58.0
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.5e-53 211.5 263 50.2
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.6e-51 207.2 308 43.8
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.3e-48 197.6 296 42.2
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 3.1e-47 193.0 120 70.8
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 9.1e-47 191.4 158 60.8
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 4.5e-46 189.1 158 57.6
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-43 181.0 122 73.8
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 7.9e-43 178.3 157 59.2
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.4e-39 167.5 184 54.3
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.6e-35 154.1 156 51.3
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.2e-28 129.8 86 67.4
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.7e-27 126.7 142 53.5
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 2.3e-26 123.6 147 52.4
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.7e-24 117.5 220 31.4
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.7e-24 116.3 120 49.2
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.5e-22 109.4 94 58.5
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.6e-13 78.6 60 60.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-11 74.7 161 35.4
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.8e-10 68.9 39 82.1
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.4e-09 66.2 57 61.4
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.4e-07 61.2 49 63.3


User provided reference genes

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