Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 6.8e-96 354.0 178 100.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.8e-84 313.9 174 87.4
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.7e-83 312.8 171 88.9
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.0e-83 312.0 171 91.2
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.6e-83 310.8 174 86.8
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.3e-82 308.5 171 89.5
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.3e-82 308.1 171 88.9
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.2e-81 306.6 174 86.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.6e-81 306.2 174 86.2
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 4.7e-81 304.7 174 86.8
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.2e-81 304.3 174 85.1
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.1e-81 303.9 171 87.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.1e-81 303.9 171 87.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-80 303.5 174 85.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.4e-80 303.1 173 86.1
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.4e-80 303.1 174 85.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.0e-80 301.6 171 87.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 8.9e-80 300.4 169 88.2
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 8.9e-80 300.4 169 88.2
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 8.9e-80 300.4 177 84.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 8.9e-80 300.4 171 86.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.9e-80 300.4 174 83.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 8.9e-80 300.4 174 83.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.2e-79 300.1 171 87.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.5e-79 299.7 176 83.5
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.5e-79 299.7 164 90.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.0e-79 299.3 171 86.5
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.4e-79 298.5 171 86.0
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 3.4e-79 298.5 171 86.5
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 3.4e-79 298.5 174 85.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.4e-79 298.1 171 85.4
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 4.4e-79 298.1 174 82.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 5.8e-79 297.7 171 86.0
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 5.8e-79 297.7 169 87.0
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.8e-79 297.7 171 85.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.5e-79 297.4 168 87.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 7.5e-79 297.4 171 85.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.9e-79 297.0 169 85.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.3e-78 296.6 171 85.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-78 296.6 171 85.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-78 296.6 171 85.4
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.3e-78 296.6 168 87.5
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.7e-78 296.2 171 85.4
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.7e-78 296.2 168 86.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 2.2e-78 295.8 171 85.4
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.2e-78 295.8 171 84.8
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 2.9e-78 295.4 176 83.0
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.9e-78 295.4 170 85.3
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.9e-78 295.4 168 86.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.7e-78 295.0 171 86.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.7e-78 295.0 171 84.8
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 4.9e-78 294.7 171 84.8
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.9e-78 294.7 170 85.3
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 6.4e-78 294.3 171 85.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 6.4e-78 294.3 169 87.0
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.4e-78 294.3 171 84.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 8.3e-78 293.9 171 84.8
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.3e-78 293.9 171 84.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 8.3e-78 293.9 171 84.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.1e-77 293.5 175 82.3
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-77 293.5 168 86.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-77 293.1 171 86.0
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.4e-77 293.1 171 84.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.4e-77 293.1 169 84.6
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.9e-77 292.7 202 74.8
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.4e-77 292.4 171 84.2
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.2e-77 292.0 171 84.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.2e-77 292.0 171 82.5
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.2e-77 292.0 171 84.2
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 3.2e-77 292.0 169 84.0
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.1e-77 291.6 172 84.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.4e-77 291.2 171 84.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 5.4e-77 291.2 171 83.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 7.1e-77 290.8 171 84.2
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 7.1e-77 290.8 171 84.2
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 9.2e-77 290.4 172 84.3
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.2e-76 290.0 174 83.9
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.6e-76 289.7 169 82.8
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.7e-76 288.9 169 82.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.7e-76 288.9 172 83.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.7e-76 288.9 172 83.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.7e-76 288.9 175 82.9
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 3.5e-76 288.5 163 87.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.5e-76 288.5 171 84.2
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.5e-76 288.5 164 86.6
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 6.0e-76 287.7 172 83.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 7.8e-76 287.3 163 85.9
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.0e-75 287.0 172 82.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.0e-75 287.0 172 82.6
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.0e-75 287.0 173 83.8
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.3e-75 286.6 172 82.6
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 5.1e-75 284.6 168 83.9
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 8.6e-75 283.9 163 85.9
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.5e-74 283.1 171 82.5
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 5.6e-74 281.2 162 84.6
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 7.3e-74 280.8 162 83.3
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.6e-73 278.5 162 82.7
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.7e-73 278.1 169 82.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.3e-72 275.8 175 78.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.9e-72 273.9 169 78.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.9e-72 273.9 164 79.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.4e-71 271.6 174 79.3
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.3e-70 270.0 226 65.0
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.2e-68 263.5 155 80.6
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.0e-67 258.8 166 75.9
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.6e-65 253.1 166 77.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 3.6e-65 251.9 162 79.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 5.2e-64 248.1 175 74.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 7.6e-63 244.2 138 85.5
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.9e-62 242.3 162 74.1
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.5e-60 235.3 138 83.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.0e-59 232.3 128 87.5
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.6e-57 226.5 134 83.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.1e-56 223.8 133 82.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.1e-56 223.8 133 80.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-56 223.4 136 82.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.3e-51 206.1 179 63.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 7.4e-50 201.1 171 64.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 7.4e-50 201.1 139 74.1
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 5.1e-43 178.3 106 81.1
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 8.7e-43 177.6 124 75.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-42 177.2 172 61.0
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.8e-41 171.8 107 78.5
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.5e-39 166.8 108 75.0
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.2e-38 162.9 158 53.2
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.3e-35 152.9 175 48.6
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.5e-34 150.2 211 47.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.5e-34 149.4 125 60.8
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 2.9e-30 136.0 147 45.6
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 4.8e-25 118.6 73 74.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.2e-25 117.9 65 89.2
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.8e-24 116.7 70 81.4
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.9e-21 106.7 97 60.8
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 9.7e-18 94.4 103 52.4
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 9.7e-18 94.4 103 52.4
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.7e-17 93.6 142 42.3
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 3.1e-16 89.4 62 74.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 3.1e-16 89.4 62 74.2
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.5e-15 87.0 164 36.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.2e-13 79.0 49 73.5
Cfa022458 Carpinus fangiana HOM05D005375 ORTHO05D121393 4.5e-07 58.9 95 34.7
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.0e-06 57.8 139 26.6
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 1.3e-06 57.4 139 26.6
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.7e-06 57.0 139 26.6
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 2.2e-06 56.6 139 26.6
ATR0568G101 Amborella trichopoda HOM05D000230 ORTHO05D000176 2.9e-06 56.2 146 26.7
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.9e-06 56.2 139 26.6
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.9e-06 56.2 139 26.6
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 3.8e-06 55.8 139 26.6
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 3.8e-06 55.8 115 30.4
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 5.0e-06 55.5 139 24.5
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 5.0e-06 55.5 139 25.9
THA.LOC104826231 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 6.5e-06 55.1 137 25.5


User provided reference genes

Program Settings