Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.5 Carica papaya HOM05D000140 ORTHO05D000087 3.6e-48 194.5 93 100.0
Cpa.g.sc28.48 Carica papaya HOM05D000140 ORTHO05D000087 2.5e-25 118.6 85 70.6
Cpa.g.sc18.155 Carica papaya HOM05D000140 ORTHO05D000087 2.0e-22 109.0 73 71.2
Cpa.g.sc18.156 Carica papaya HOM05D000140 ORTHO05D000087 2.0e-22 109.0 73 71.2
TWI63G0711 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 3.0e-18 95.1 84 56.0
TWI38G0112 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 1.1e-17 93.2 84 57.1
Nitab4.5_0000851g0040 Nicotiana tabacum HOM05D000140 ORTHO05D000087 2.8e-16 88.6 74 59.5
Prupe.7G194500 Prunus persica HOM05D000140 ORTHO05D000087 4.7e-16 87.8 84 51.2
TAR624G0190 Trochodendron aralioides HOM05D000140 ORTHO05D000087 1.4e-15 86.3 74 54.1
Eucgr.C00782 Eucalyptus grandis HOM05D000140 ORTHO05D000087 1.8e-15 85.9 74 52.7
MD15G1220900 Malus domestica HOM05D000140 ORTHO05D000087 4.0e-15 84.7 84 52.4
MD15G1221000 Malus domestica HOM05D000140 ORTHO05D000087 4.0e-15 84.7 84 52.4
Nitab4.5_0010261g0030 Nicotiana tabacum HOM05D000140 ORTHO05D000087 4.0e-15 84.7 74 55.4
Actinidia39636 Actinidia chinensis HOM05D000140 ORTHO05D000087 5.2e-15 84.3 74 54.1
Manes.03G041600 Manihot esculenta HOM05D000140 ORTHO05D000087 6.8e-15 84.0 84 51.2
Nitab4.5_0009109g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.5e-14 82.8 74 54.1
Potri.001G025701 Populus trichocarpa HOM05D000140 ORTHO05D000087 1.5e-14 82.8 74 52.7
GSVIVG01015038001 Vitis vinifera HOM05D000140 ORTHO05D000087 1.5e-14 82.8 74 54.1
Aa31LG1G13970 Aethionema arabicum HOM05D000140 ORTHO05D000087 2.0e-14 82.4 74 50.0
PGR142G2924 Punica granatum HOM05D000140 ORTHO05D000087 2.0e-14 82.4 90 50.0
Atru.chr7.1744 Acer truncatum HOM05D000140 ORTHO05D000087 2.6e-14 82.0 73 53.4
Sabra01G0019100 Salix brachista HOM05D000140 ORTHO05D000087 2.6e-14 82.0 84 47.6
Peaxi162Scf00001g00611 Petunia axillaris HOM05D000140 ORTHO05D000087 3.4e-14 81.6 74 52.7
Nitab4.5_0001565g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 4.4e-14 81.3 74 52.7
Hma1.2p1_0869F.1_g230660 Hydrangea macrophylla HOM05D000140 ORTHO05D000087 5.8e-14 80.9 90 44.4
Potri.001G025800 Populus trichocarpa HOM05D000140 ORTHO05D000087 7.6e-14 80.5 84 45.2
Dinv25531 Davidia involucrata HOM05D000140 ORTHO05D000087 9.9e-14 80.1 80 46.2
THA.LOC104810988 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 9.9e-14 80.1 74 50.0
Lj4A917T70 Lonicera japonica HOM05D000140 ORTHO05D000087 1.3e-13 79.7 70 52.9
Oeu062249.1 Olea europaea HOM05D000140 ORTHO05D000087 1.7e-13 79.3 67 56.7
CAN.G206.111 Capsicum annuum HOM05D000140 ORTHO05D000087 2.2e-13 79.0 74 51.4
RcHm_v2.0_Chr2g0095511 Rosa chinensis HOM05D000140 ORTHO05D000087 2.2e-13 79.0 74 51.4
Sabra01G0019000 Salix brachista HOM05D000140 ORTHO05D000087 2.2e-13 79.0 74 50.0
Atru.chr7.1743 Acer truncatum HOM05D000140 ORTHO05D000087 2.9e-13 78.6 73 50.7
Duzib168G0670 Durio zibethinus HOM05D000140 ORTHO05D000087 3.8e-13 78.2 74 50.0
Cc06_g12510 Coffea canephora HOM05D000140 ORTHO05D000087 4.9e-13 77.8 74 50.0
CsaV3_1G041290 Cucumis sativus L. HOM05D000140 ORTHO05D000087 4.9e-13 77.8 84 46.4
Thhalv10012695m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 4.9e-13 77.8 74 45.9
Rhsim05G0004500 Rhododendron simsii HOM05D000140 ORTHO05D000087 6.4e-13 77.4 74 45.9
THA.LOC104815078 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 6.4e-13 77.4 74 47.3
Peaxi162Scf00547g00109 Petunia axillaris HOM05D000140 ORTHO05D000087 1.1e-12 76.6 74 51.4
SalBow6G6601 Salvia bowleyana HOM05D000140 ORTHO05D000087 1.1e-12 76.6 74 51.4
COL.COLO4_18061 Corchorus olitorius HOM05D000140 ORTHO05D000087 1.4e-12 76.3 74 51.4
Duzib150G1016 Durio zibethinus HOM05D000140 ORTHO05D000087 1.4e-12 76.3 74 45.9
QL11p001329 Quercus lobata HOM05D000140 ORTHO05D000087 1.4e-12 76.3 84 46.4
RcHm_v2.0_Chr2g0095591 Rosa chinensis HOM05D000140 ORTHO05D000087 1.4e-12 76.3 74 45.9
ClCG03G014850 Citrullus lanatus HOM05D000140 ORTHO05D000087 1.9e-12 75.9 84 46.4
Thecc.09G073000 Theobroma cacao HOM05D000140 ORTHO05D000087 2.4e-12 75.5 84 48.8
BcaC04g19462 Brassica carinata HOM05D000140 ORTHO05D000087 3.2e-12 75.1 75 46.7
A10p19310 Brassica napus HOM05D000140 ORTHO05D000087 3.2e-12 75.1 75 46.7
C09p55490 Brassica napus HOM05D000140 ORTHO05D000087 3.2e-12 75.1 75 46.7
BolC9t58411H Brassica oleracea HOM05D000140 ORTHO05D000087 3.2e-12 75.1 75 46.7
BraA10t44008Z Brassica rapa HOM05D000140 ORTHO05D000087 3.2e-12 75.1 75 46.7
Migut.J00903 Erythranthe guttata HOM05D000140 ORTHO05D000087 3.2e-12 75.1 68 54.4
Gohir.1Z049351 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
Gohir.1Z049695 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
Gohir.1Z088400 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
Gohir.D13G196315 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
Gorai.013G222800 Gossypium raimondii HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
Gorai.013G223000 Gossypium raimondii HOM05D000140 ORTHO05D000087 3.2e-12 75.1 74 44.6
BcaB08g36521 Brassica carinata HOM05D000140 ORTHO05D000087 4.2e-12 74.7 75 46.7
Carub.0006s1905 Capsella rubella HOM05D000140 ORTHO05D000087 4.2e-12 74.7 74 43.2
vmacro17107 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 4.2e-12 74.7 74 44.6
FvH4_1g09190 Fragaria vesca HOM05D000140 ORTHO05D000087 5.4e-12 74.3 75 46.7
FAN19G2173 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.4e-12 74.3 75 46.7
FAN23G0753 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.4e-12 74.3 75 46.7
FAN28G1930 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.4e-12 74.3 75 46.7
Aqoxy7G01005 Aquilegia oxysepala HOM05D000140 ORTHO05D000087 7.1e-12 73.9 74 41.9
Gohir.A11G298100 Gossypium hirsutum HOM05D000140 ORTHO05D000087 7.1e-12 73.9 74 43.2
SGA_v2.0_scaffold281G46884 Striga asiatica HOM05D000140 ORTHO05D000087 7.1e-12 73.9 74 47.3
Oeu013101.1 Olea europaea HOM05D000140 ORTHO05D000087 9.3e-12 73.6 66 54.5
Gorai.013G261500 Gossypium raimondii HOM05D000140 ORTHO05D000087 1.2e-11 73.2 74 43.2
MELO3C015540.2 Cucumis melo HOM05D000140 ORTHO05D000087 1.6e-11 72.8 84 45.2
FAN28G2598 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-11 72.8 80 42.5
Sed0007248 Sechium edule HOM05D000140 ORTHO05D000087 1.6e-11 72.8 81 44.4
Lsat_1_v5_gn_5_139760 Lactuca sativa HOM05D000140 ORTHO05D000087 2.1e-11 72.4 70 47.1
Glyma.13G112300 Glycine max HOM05D000140 ORTHO05D000087 2.7e-11 72.0 69 40.6
Sopen07g021820 Solanum pennellii HOM05D000140 ORTHO05D000087 2.7e-11 72.0 74 47.3
AT5G20710 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 3.5e-11 71.6 74 41.9
PGSC0003DMG400023293 Solanum tuberosum HOM05D000140 ORTHO05D000087 3.5e-11 71.6 74 45.9
Thecc.06G006700 Theobroma cacao HOM05D000140 ORTHO05D000087 3.5e-11 71.6 84 47.6
Solyc07g042220.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 4.6e-11 71.2 74 47.3
CARHR192100 Cardamine hirsuta HOM05D000140 ORTHO05D000087 6.0e-11 70.9 74 40.5
FAN26G0378 Fragaria x ananassa HOM05D000140 ORTHO05D000087 6.0e-11 70.9 79 44.3
AL6G32270 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 7.8e-11 70.5 74 41.9
CSS0043469 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 7.8e-11 70.5 80 45.0
FvH4_1g09120 Fragaria vesca HOM05D000140 ORTHO05D000087 7.8e-11 70.5 79 44.3
FAN19G2370 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.8e-11 70.5 79 44.3
FAN23G2854 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.8e-11 70.5 79 44.3
FAN26G0458 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.8e-11 70.5 79 44.3
FAN28G0753 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.8e-11 70.5 79 44.3
Gohir.D13G231000 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.0e-10 70.1 74 41.9
FvH4_1g26380 Fragaria vesca HOM05D000140 ORTHO05D000087 1.7e-10 69.3 78 43.6
FAN26G2636 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.7e-10 69.3 79 43.0
Manes.03G042616 Manihot esculenta HOM05D000140 ORTHO05D000087 1.7e-10 69.3 84 42.9
Sed0016800 Sechium edule HOM05D000140 ORTHO05D000087 1.7e-10 69.3 74 43.2
FAN28G0123 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.3e-10 68.9 79 43.0
Gorai.013G216400 Gossypium raimondii HOM05D000140 ORTHO05D000087 2.3e-10 68.9 74 40.5
Lsat_1_v5_gn_8_75520 Lactuca sativa HOM05D000140 ORTHO05D000087 3.9e-10 68.2 73 45.2
arahy.Tifrunner.gnm1.ann1.G8SY23 Arachis hypogaea HOM05D000140 ORTHO05D000087 5.1e-10 67.8 58 46.6
DCAR_024770 Daucus carota HOM05D000140 ORTHO05D000087 5.1e-10 67.8 84 38.1
THA.LOC104798528 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 5.1e-10 67.8 74 37.8
arahy.Tifrunner.gnm1.ann1.Q2MNTG Arachis hypogaea HOM05D000140 ORTHO05D000087 6.6e-10 67.4 58 46.6
Lj4g0014832 Lotus japonicus HOM05D000140 ORTHO05D000087 6.6e-10 67.4 78 39.7
VMungo1309G0610 Vigna mungo HOM05D000140 ORTHO05D000087 6.6e-10 67.4 69 43.5
FAN19G1509 Fragaria x ananassa HOM05D000140 ORTHO05D000087 8.7e-10 67.0 78 42.3
Nn5g28079 Nelumbo nucifera HOM05D000140 ORTHO05D000087 8.7e-10 67.0 74 40.5
Nn5g28081 Nelumbo nucifera HOM05D000140 ORTHO05D000087 8.7e-10 67.0 74 40.5
Migut.F01997 Erythranthe guttata HOM05D000140 ORTHO05D000087 1.1e-09 66.6 64 48.4
Carub.0001s3004 Capsella rubella HOM05D000140 ORTHO05D000087 1.5e-09 66.2 85 34.1
CARHR031040 Cardamine hirsuta HOM05D000140 ORTHO05D000087 1.9e-09 65.9 85 32.9
Sp1g27420 Schrenkiella parvula HOM05D000140 ORTHO05D000087 2.5e-09 65.5 77 35.1
arahy.Tifrunner.gnm1.ann1.47J9LE Arachis hypogaea HOM05D000140 ORTHO05D000087 5.6e-09 64.3 58 46.6
VMungo1309G1515 Vigna mungo HOM05D000140 ORTHO05D000087 5.6e-09 64.3 69 39.1
AL1G45810 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 7.3e-09 63.9 85 31.8
Sp6g23770 Schrenkiella parvula HOM05D000140 ORTHO05D000087 7.3e-09 63.9 60 46.7
Phvul.009G225100 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 9.6e-09 63.5 69 40.6
Ciclev10010454m.g Citrus clementina HOM05D000140 ORTHO05D000087 1.3e-08 63.2 75 45.3
Sc08g0009020 Simmondsia chinensis HOM05D000140 ORTHO05D000087 1.3e-08 63.2 80 41.2
Thhalv10006871m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 2.8e-08 62.0 85 34.1
A06p04550 Brassica napus HOM05D000140 ORTHO05D000087 3.6e-08 61.6 74 36.5
BraA06t23659Z Brassica rapa HOM05D000140 ORTHO05D000087 3.6e-08 61.6 74 36.5
TAR369G0695 Trochodendron aralioides HOM05D000140 ORTHO05D000087 6.2e-08 60.8 69 44.9
EL10Ac8g18686 Beta vulgaris HOM05D000140 ORTHO05D000087 8.1e-08 60.5 67 40.3
Duzib084G0860 Durio zibethinus HOM05D000140 ORTHO05D000087 8.1e-08 60.5 72 44.4
Medtr2g042610 Medicago truncatula HOM05D000140 ORTHO05D000087 8.1e-08 60.5 64 35.9
AT1G31740 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 1.4e-07 59.7 85 31.8
BcaB07g32820 Brassica carinata HOM05D000140 ORTHO05D000087 1.8e-07 59.3 74 32.4
PSO386G0060 Papaver somniferum HOM05D000140 ORTHO05D000087 2.4e-07 58.9 81 38.3
PSO386G0254 Papaver somniferum HOM05D000140 ORTHO05D000087 2.4e-07 58.9 81 38.3
Hund26068 Selenicereus undatus HOM05D000140 ORTHO05D000087 3.1e-07 58.5 75 38.7
BcaB02g07518 Brassica carinata HOM05D000140 ORTHO05D000087 4.0e-07 58.2 75 34.7
Aa31LG2G14350 Aethionema arabicum HOM05D000140 ORTHO05D000087 5.3e-07 57.8 74 35.1
Dinv37371 Davidia involucrata HOM05D000140 ORTHO05D000087 6.9e-07 57.4 58 44.8
Migut.J00486 Erythranthe guttata HOM05D000140 ORTHO05D000087 6.9e-07 57.4 63 41.3
THA.LOC104814390 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 6.9e-07 57.4 69 34.8
BcaC08g44973 Brassica carinata HOM05D000140 ORTHO05D000087 1.2e-06 56.6 74 36.5
C06p26010 Brassica napus HOM05D000140 ORTHO05D000087 1.2e-06 56.6 74 36.5
BolC6t37766H Brassica oleracea HOM05D000140 ORTHO05D000087 1.2e-06 56.6 74 36.5
Glyma.16G083700 Glycine max HOM05D000140 ORTHO05D000087 1.5e-06 56.2 80 40.0
A07p05030 Brassica napus HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
A07p26460 Brassica napus HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
A07p26470 Brassica napus HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
BolC6t38055H Brassica oleracea HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
BraA07t28295Z Brassica rapa HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
BraA07t30104Z Brassica rapa HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
BraA07t30290Z Brassica rapa HOM05D000140 ORTHO05D000087 2.0e-06 55.8 74 35.1
Lalb_Chr10g0095941 Lupinus albus HOM05D000140 ORTHO05D000087 2.0e-06 55.8 69 40.6
TWI34G1582 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 2.0e-06 55.8 71 42.3
GSVIVG01033736001 Vitis vinifera HOM05D000140 ORTHO05D000087 2.0e-06 55.8 57 42.1
BcaC08g45286 Brassica carinata HOM05D000140 ORTHO05D000087 2.6e-06 55.5 74 35.1
C06p28850 Brassica napus HOM05D000140 ORTHO05D000087 2.6e-06 55.5 74 35.1
C06p28860 Brassica napus HOM05D000140 ORTHO05D000087 2.6e-06 55.5 74 35.1
C06p28880 Brassica napus HOM05D000140 ORTHO05D000087 2.6e-06 55.5 74 35.1
A01p37540 Brassica napus HOM05D000140 ORTHO05D000087 3.4e-06 55.1 74 35.1
Psat5g215120 Pisum sativum HOM05D000140 ORTHO05D000087 3.4e-06 55.1 73 41.1
BraA01t03815Z Brassica rapa HOM05D000140 ORTHO05D000087 4.4e-06 54.7 74 33.8
COL.COLO4_16849 Corchorus olitorius HOM05D000140 ORTHO05D000087 5.8e-06 54.3 64 39.1
MBI19_g29876_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 5.8e-06 54.3 80 38.8
Sed0020264 Sechium edule HOM05D000140 ORTHO05D000087 5.8e-06 54.3 44 50.0
C06p27510 Brassica napus HOM05D000140 ORTHO05D000087 7.6e-06 53.9 74 35.1
A07p25520 Brassica napus HOM05D000140 ORTHO05D000087 9.9e-06 53.5 74 35.1
BraA07t30194Z Brassica rapa HOM05D000140 ORTHO05D000087 9.9e-06 53.5 74 35.1


User provided reference genes

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