Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 4.7e-111 404.4 190 100.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.7e-89 332.8 190 79.5
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 5.8e-85 317.8 190 73.7
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 74.2
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 75.8
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 1.7e-84 316.2 191 74.3
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 3.7e-84 315.1 191 73.8
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 3.7e-84 315.1 190 77.4
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.4e-83 313.2 189 73.5
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.9e-83 312.8 190 73.2
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 2.4e-83 312.4 189 76.2
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 6.0e-82 307.8 190 75.3
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 7.8e-82 307.4 189 73.5
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.3e-81 306.6 190 75.8
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.3e-81 305.8 187 71.1
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.3e-81 305.8 187 71.1
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 3.0e-81 305.4 186 74.2
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.9e-81 305.1 189 71.4
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 5.0e-81 304.7 190 72.6
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 5.0e-81 304.7 190 72.6
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 5.0e-81 304.7 189 73.0
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.1e-80 303.5 189 72.0
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.1e-80 303.5 190 72.6
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.1e-80 303.5 189 70.9
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.9e-80 302.8 190 72.6
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 2.5e-80 302.4 190 69.5
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 4.3e-80 301.6 190 72.6
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 5.6e-80 301.2 190 71.6
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 5.6e-80 301.2 190 70.0
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 9.5e-80 300.4 190 72.1
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 9.5e-80 300.4 190 72.1
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 9.5e-80 300.4 190 72.1
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 9.5e-80 300.4 191 75.4
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.2e-79 300.1 190 72.6
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.6e-79 299.7 190 71.1
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 1.6e-79 299.7 191 72.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.8e-79 298.9 188 71.8
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 3.6e-79 298.5 189 74.1
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 3.6e-79 298.5 187 72.2
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 3.6e-79 298.5 187 71.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 4.7e-79 298.1 205 67.3
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.7e-79 298.1 187 70.1
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 4.7e-79 298.1 187 71.7
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 6.2e-79 297.7 189 70.4
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 1.1e-78 297.0 184 70.7
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-78 297.0 184 70.7
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.8e-78 296.2 188 70.2
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 3.1e-78 295.4 187 71.1
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 4.0e-78 295.0 190 71.1
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 5.2e-78 294.7 187 70.6
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 8.9e-78 293.9 190 70.0
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.2e-77 293.5 190 71.1
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.5e-77 293.1 186 71.0
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 2.0e-77 292.7 188 71.3
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 4.4e-77 291.6 190 70.0
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 7.5e-77 290.8 186 71.5
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.7e-76 289.7 189 70.4
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.2e-76 289.3 188 70.7
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 2.2e-76 289.3 190 69.5
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.9e-76 288.9 190 69.5
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.9e-76 288.9 189 68.3
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 3.7e-76 288.5 219 62.6
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 4.9e-76 288.1 190 69.5
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 4.9e-76 288.1 190 70.0
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 6.4e-76 287.7 187 70.1
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 8.3e-76 287.3 188 70.2
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.4e-75 286.6 190 68.9
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.9e-75 286.2 190 69.5
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 5.4e-75 284.6 190 68.9
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.4e-75 284.6 188 68.6
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 7.1e-75 284.3 190 68.9
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 3.5e-74 282.0 190 66.8
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 4.6e-74 281.6 190 66.3
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 7.8e-74 280.8 189 68.3
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 7.8e-74 280.8 190 68.9
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.0e-73 280.4 192 67.7
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.7e-73 279.6 193 66.8
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 3.0e-73 278.9 190 65.3
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 3.9e-73 278.5 190 67.4
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 3.9e-73 278.5 189 68.3
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 6.6e-73 277.7 189 68.3
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 8.6e-73 277.3 190 64.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 8.6e-73 277.3 190 64.7
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.9e-72 276.2 190 68.4
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 4.3e-72 275.0 191 64.9
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.1e-71 272.7 189 69.3
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 8.1e-71 270.8 185 64.3
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 1.1e-70 270.4 190 66.8
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 1.4e-70 270.0 228 56.6
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 4.0e-70 268.5 188 66.5
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.6e-69 265.8 188 68.1
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.4e-69 265.4 190 65.3
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 7.6e-69 264.2 190 64.7
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-68 263.5 189 68.8
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 3.7e-68 261.9 184 64.1
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.9e-67 259.6 149 76.5
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.4e-67 259.2 190 63.7
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.3e-65 253.4 188 64.9
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 3.0e-65 252.3 191 63.4
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 5.1e-65 251.5 188 61.2
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.6e-64 248.1 192 61.5
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 8.1e-63 244.2 149 71.1
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.4e-62 243.4 184 66.3
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 2.4e-62 242.7 188 63.3
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.3e-60 236.9 185 62.7
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 4.9e-60 235.0 189 59.8
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 6.4e-60 234.6 190 60.5
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 8.4e-60 234.2 185 61.6
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 1.4e-59 233.4 188 60.6
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 1.9e-59 233.0 188 60.6
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.4e-59 232.6 185 57.8
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.6e-58 229.9 180 64.4
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.9e-56 223.0 190 57.9
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 9.6e-56 220.7 190 57.9
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 3.6e-55 218.8 186 55.4
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.1e-54 217.2 189 59.8
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.1e-54 217.2 182 56.0
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.2e-52 209.5 136 69.9
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.4e-51 206.8 188 51.6
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 1.7e-36 156.8 111 63.1
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.6e-31 140.2 84 71.4
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.4e-30 137.1 110 58.2
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 8.4e-28 127.9 82 73.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.7e-26 122.9 99 64.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.5e-21 105.5 121 49.6
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.2e-19 99.0 95 50.5
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.1e-11 74.3 78 46.2


User provided reference genes

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