Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.8e-177 624.8 330 100.0
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.4e-139 498.0 332 80.1
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-138 496.9 328 80.8
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.1e-138 496.1 334 78.7
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-137 493.8 328 78.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-137 493.4 331 80.4
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-137 493.0 328 79.6
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-137 492.3 328 76.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 5.1e-137 491.5 318 78.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 5.1e-137 491.5 326 80.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 6.6e-137 491.1 321 80.1
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 6.6e-137 491.1 329 80.5
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 8.6e-137 490.7 334 77.5
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.9e-136 489.6 318 76.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 9.5e-136 487.3 330 77.6
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.2e-135 486.9 332 76.2
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.2e-135 486.9 333 76.9
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.8e-135 485.7 328 76.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.8e-135 485.7 328 74.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.8e-135 485.7 325 77.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.6e-135 485.3 332 75.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 8.1e-135 484.2 323 77.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.1e-135 484.2 322 76.4
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.1e-135 484.2 322 76.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.8e-134 483.0 336 76.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 3.1e-134 482.3 338 72.2
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.1e-134 482.3 331 77.3
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 8.9e-134 480.7 340 75.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.4e-133 478.8 330 75.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.4e-133 478.4 338 73.4
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.5e-133 477.6 338 74.9
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.3e-132 476.9 332 73.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.7e-132 475.3 323 73.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 6.4e-132 474.6 329 73.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.9e-131 473.0 346 69.9
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 5.4e-131 471.5 338 74.3
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.1e-131 471.1 333 73.6
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 9.2e-131 470.7 330 77.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.2e-130 470.3 321 72.3
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 6.0e-130 468.0 334 75.7
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 7.8e-130 467.6 331 73.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.1e-129 464.9 341 70.1
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-129 464.9 331 71.9
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 6.6e-129 464.5 313 78.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.5e-128 463.4 331 72.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 3.3e-128 462.2 331 71.6
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.3e-128 462.2 330 72.1
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 9.5e-128 460.7 334 74.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 9.5e-128 460.7 350 71.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.6e-127 459.9 337 73.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.6e-127 459.9 356 68.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.8e-127 459.1 330 74.5
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 4.7e-127 458.4 320 75.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-126 457.2 319 76.5
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-126 456.8 310 77.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.4e-126 456.1 316 76.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.2e-125 453.8 323 74.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 5.8e-125 451.4 309 76.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.6e-125 451.1 329 73.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.9e-125 450.7 311 72.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.2e-124 449.5 309 76.1
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.2e-124 449.5 311 75.6
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.9e-124 449.1 329 70.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.9e-124 449.1 329 73.6
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.9e-124 449.1 309 76.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 6.4e-124 448.0 324 69.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 8.4e-124 447.6 312 73.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.4e-123 446.8 325 74.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 4.2e-123 445.3 331 71.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.7e-122 442.6 320 72.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.3e-121 439.5 326 73.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.3e-120 435.3 321 70.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.6e-120 434.9 315 73.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 9.6e-120 434.1 325 69.8
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.1e-118 430.6 310 71.0
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.4e-118 429.5 329 74.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.4e-118 429.5 332 69.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 5.3e-118 428.3 331 71.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 6.9e-118 427.9 333 69.4
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.0e-117 426.4 320 71.2
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.8e-117 424.9 301 71.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 7.6e-117 424.5 324 69.4
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 7.6e-117 424.5 322 71.4
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.9e-116 422.5 318 69.8
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.9e-116 422.5 328 71.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.2e-114 417.2 323 63.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.1e-114 416.4 251 80.9
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.1e-114 416.4 309 72.8
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 3.0e-113 412.5 315 71.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 6.6e-113 411.4 331 69.8
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.9e-112 409.8 329 65.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-111 406.8 299 75.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.8e-111 405.2 314 65.6
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.1e-110 404.1 314 73.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.4e-110 403.7 298 70.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.4e-110 402.9 322 68.3
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.5e-109 400.2 291 70.8
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.6e-109 399.4 321 68.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 5.8e-109 398.3 327 69.4
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.4e-107 393.7 316 65.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-106 390.2 302 69.5
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.4e-104 381.3 294 67.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 6.2e-103 378.3 314 64.3
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.4e-102 376.3 322 60.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 5.3e-102 375.2 290 67.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.6e-101 372.9 298 67.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 3.4e-101 372.5 220 84.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.4e-101 372.5 261 77.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.4e-99 367.1 313 59.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.3e-99 364.4 297 69.7
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-97 359.8 320 64.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.3e-97 359.8 326 65.0
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.3e-94 348.6 295 65.1
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 5.8e-93 345.1 325 61.8
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.2e-91 339.3 223 75.3
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 9.3e-91 337.8 271 70.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.8e-89 333.6 237 70.9
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.6e-85 319.7 264 63.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.4e-85 319.3 230 70.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.7e-84 317.0 287 58.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.7e-84 317.0 330 52.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.5e-83 313.2 240 70.4
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-81 306.6 279 62.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.2e-75 285.8 230 63.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 8.8e-73 278.1 275 63.6
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 7.4e-72 275.0 289 54.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.4e-70 270.8 209 70.3
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.1e-70 269.6 159 81.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.9e-69 265.4 244 60.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.5e-67 260.8 203 65.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 9.4e-67 258.1 270 53.0
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-66 255.4 214 64.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-66 255.4 214 64.0
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.5e-64 250.8 232 55.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.6e-64 250.0 175 66.3
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.2e-60 236.9 140 82.9
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.1e-58 230.3 223 59.2
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.4e-57 227.6 270 49.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-57 226.5 226 56.2
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.5e-56 224.2 202 62.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.0e-56 223.8 198 66.2
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.6e-53 214.2 236 48.7
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.1e-51 208.0 140 72.1
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.6e-48 196.8 261 47.5
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 7.0e-46 188.7 235 48.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.3e-44 183.7 115 82.6
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 9.8e-40 168.3 164 52.4
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.9e-39 166.8 139 60.4
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.9e-39 166.8 151 51.0
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 9.2e-38 161.8 185 55.7
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 3.5e-37 159.8 281 46.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.3e-36 157.9 263 33.5
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.6e-35 152.5 116 61.2
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 7.3e-35 152.1 173 52.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 7.3e-35 152.1 173 52.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.6e-34 151.0 173 52.0
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 6.8e-33 145.6 127 66.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.4e-30 136.0 174 55.2
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-28 131.3 82 81.7
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.0e-28 129.4 209 37.8
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.2e-23 114.0 306 30.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 6.4e-23 112.5 83 63.9
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.3e-23 112.1 106 50.9
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-22 111.3 100 54.0
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 5.4e-22 109.4 67 65.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 2.1e-21 107.5 67 62.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 2.3e-20 104.0 67 62.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.3e-20 104.0 66 65.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 8.6e-20 102.1 94 60.6
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 8.6e-20 102.1 67 61.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 8.6e-20 102.1 67 61.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.5e-19 101.3 67 62.7
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 4.3e-19 99.8 62 61.3
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 6.2e-18 95.9 72 55.6
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 6.2e-18 95.9 72 55.6
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.3e-17 94.0 80 57.5
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 65 55.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 65 55.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 4.9e-15 86.3 105 56.2
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.9e-15 86.3 71 64.8
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 6.4e-15 85.9 99 48.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.2e-14 83.6 91 61.5
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 9.2e-14 82.0 109 36.7
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.2e-07 60.8 92 43.5
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 6.4e-07 59.3 71 49.3
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 8.4e-07 58.9 68 51.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 5.4e-06 56.2 126 32.5


User provided reference genes

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