Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 4.1e-169 598.2 352 100.0
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.2e-112 410.6 306 73.9
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.0e-111 407.5 345 63.8
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-110 404.1 348 65.8
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.5e-110 403.7 348 65.2
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.9e-110 403.3 314 70.7
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.9e-110 403.3 347 66.6
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.5e-110 402.9 345 64.9
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.3e-109 400.6 304 70.7
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.2e-109 398.3 316 69.9
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 3.1e-108 396.0 317 71.9
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.3e-108 395.2 347 65.1
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 6.9e-108 394.8 290 73.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.2e-107 394.0 316 72.8
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.6e-107 392.9 303 67.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.6e-107 392.9 347 61.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.4e-106 388.3 346 60.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.4e-105 385.2 328 63.7
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.2e-104 384.0 309 67.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.1e-104 383.3 304 69.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 4.6e-104 382.1 282 73.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.3e-103 380.6 290 66.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.7e-103 380.2 314 65.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.7e-103 380.2 316 65.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 8.7e-103 377.9 281 75.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.1e-102 377.5 287 72.1
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.5e-102 376.3 293 68.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.4e-102 374.8 306 65.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.3e-101 374.0 294 69.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 3.6e-101 372.5 295 65.8
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.4e-100 370.5 292 69.5
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-100 370.2 296 69.6
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.4e-100 369.8 275 66.5
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 4.0e-100 369.0 299 67.9
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 5.3e-100 368.6 318 67.6
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.6e-99 366.3 313 64.2
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.4e-99 365.9 303 67.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 7.6e-99 364.8 305 70.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.7e-98 363.6 341 65.1
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.7e-98 363.6 297 63.6
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.9e-98 362.8 268 71.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 4.9e-98 362.1 290 65.5
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.1e-97 360.9 278 74.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.1e-97 360.9 245 76.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.1e-97 360.9 276 68.8
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 4.2e-97 359.0 286 67.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 5.5e-97 358.6 316 65.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.1e-96 356.7 291 66.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 3.5e-96 355.9 279 68.8
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 4.6e-96 355.5 306 66.0
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.6e-96 355.5 223 76.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.0e-95 354.4 282 68.4
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 5.1e-95 352.1 236 74.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.1e-94 350.9 288 66.3
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 4.3e-94 349.0 279 65.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.3e-93 347.4 223 74.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 2.1e-93 346.7 286 67.5
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.8e-93 346.3 287 68.3
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 3.7e-93 345.9 329 63.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.4e-92 344.0 227 73.1
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.0e-92 341.3 353 57.8
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 9.0e-92 341.3 364 57.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.4e-91 339.3 316 61.7
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 5.8e-91 338.6 277 65.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.0e-90 337.8 319 61.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-90 337.4 363 57.0
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.9e-90 336.3 282 63.1
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 8.4e-90 334.7 306 64.7
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.1e-89 334.3 268 68.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.2e-89 332.4 363 56.5
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 7.1e-89 331.6 360 56.9
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.2e-88 330.9 363 56.2
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.2e-88 330.9 344 55.8
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.0e-87 327.8 278 64.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.3e-87 326.6 309 58.6
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.9e-87 325.9 283 66.8
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.1e-86 324.3 275 64.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.1e-86 324.3 197 79.2
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.9e-86 323.6 197 79.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.5e-86 323.2 303 60.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.5e-86 323.2 364 56.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.3e-86 322.8 363 56.7
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 7.4e-86 321.6 363 56.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 9.6e-86 321.2 323 61.6
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-85 320.9 366 55.5
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.3e-85 320.9 366 55.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.7e-85 319.3 279 64.9
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 6.3e-85 318.5 291 62.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.1e-84 317.8 280 58.6
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.8e-84 317.0 283 65.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.4e-84 316.6 305 58.4
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.1e-84 315.8 281 64.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 9.0e-84 314.7 284 60.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 9.0e-84 314.7 315 59.4
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.2e-82 310.1 294 59.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 5.0e-82 308.9 238 71.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.1e-81 307.8 287 63.8
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.2e-81 306.2 289 59.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.1e-80 303.5 315 61.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.1e-80 303.5 315 61.0
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 3.5e-80 302.8 309 58.6
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 2.3e-79 300.1 313 58.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.1e-79 298.9 315 60.0
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 7.4e-78 295.0 260 60.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 7.7e-75 285.0 296 59.5
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.9e-73 280.4 317 56.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.7e-72 276.6 233 61.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.0e-71 273.1 272 61.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.6e-67 260.0 167 71.3
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.5e-66 255.0 286 50.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.2e-65 252.7 268 54.1
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.3e-58 231.1 139 82.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.9e-58 229.9 280 50.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.2e-53 211.8 274 42.3
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.1e-52 209.9 286 42.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.7e-51 206.8 272 52.2
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 8.5e-50 201.8 265 48.3
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.1e-44 184.9 135 64.4
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.1e-44 183.3 180 57.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.2e-43 181.4 117 76.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 3.7e-37 159.8 253 38.7
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 7.7e-35 152.1 95 76.8
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 7.7e-35 152.1 97 75.3
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.6e-34 148.7 318 34.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.5e-33 147.1 177 42.4
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-25 119.8 213 31.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 9.5e-25 118.6 165 50.9
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.4e-23 114.8 106 60.4
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.4e-20 104.8 118 50.0
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.6e-19 101.3 197 32.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 6.6e-18 95.9 104 51.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.5e-11 73.6 191 27.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.3e-09 66.6 233 25.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 7.3e-09 65.9 49 63.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 2.1e-08 64.3 53 62.3
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.4e-07 61.6 107 28.0


User provided reference genes

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