Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 5.9e-169 598.6 450 100.0
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 1.6e-105 387.9 434 75.8
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 1.3e-104 384.8 438 75.8
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 4.3e-103 379.8 456 73.5
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 2.8e-102 377.1 434 76.7
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 4.7e-102 376.3 454 71.8
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 1.4e-101 374.8 445 72.1
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 2.3e-101 374.0 438 76.0
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 6.8e-101 372.5 445 72.4
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 7.6e-100 369.0 434 74.9
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 1.3e-99 368.2 431 75.4
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 2.2e-99 367.5 455 71.0
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 2.9e-99 367.1 432 73.8
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 1.1e-98 365.2 434 73.3
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 3.2e-98 363.6 451 72.3
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 3.2e-98 363.6 434 72.6
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 5.4e-98 362.8 432 74.5
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.2e-97 361.7 434 72.1
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 1.6e-97 361.3 434 73.3
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 1.7e-96 357.8 449 72.4
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 3.3e-95 353.6 434 73.5
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 3.3e-95 353.6 441 69.8
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 5.6e-95 352.8 438 72.4
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 1.6e-94 351.3 434 71.4
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 6.2e-94 349.4 434 73.5
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 6.2e-94 349.4 450 71.6
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 1.1e-93 348.6 434 73.3
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 3.1e-93 347.1 444 69.1
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 3.1e-93 347.1 434 72.8
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 5.2e-93 346.3 450 71.3
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 5.2e-93 346.3 450 71.3
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 3.4e-92 343.6 434 73.0
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 1.3e-91 341.7 418 73.2
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 2.2e-91 340.9 449 72.2
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 6.4e-91 339.3 416 74.5
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 5.4e-90 336.3 434 72.1
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 9.3e-90 335.5 436 69.7
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 1.6e-89 334.7 435 71.5
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 2.7e-89 334.0 456 69.5
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 2.7e-89 334.0 437 71.2
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.7e-88 331.3 434 71.4
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 3.0e-88 330.5 422 54.0
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 3.9e-88 330.1 434 70.3
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 1.5e-87 328.2 433 70.2
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 1.9e-87 327.8 426 73.0
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 1.3e-86 325.1 434 69.1
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 1.3e-86 325.1 455 67.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.6e-86 324.7 434 67.7
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 2.8e-86 323.9 451 68.5
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 3.6e-86 323.6 440 68.6
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 3.6e-86 323.6 447 68.2
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 6.2e-86 322.8 451 68.1
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 1.1e-85 322.0 442 68.1
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 1.1e-85 322.0 450 67.1
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 1.1e-85 322.0 450 67.1
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 1.4e-85 321.6 404 74.3
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 2.4e-85 320.9 441 69.2
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.3e-85 319.7 441 69.2
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 5.3e-85 319.7 442 68.1
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 6.9e-85 319.3 434 69.6
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 6.9e-85 319.3 404 75.5
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 2.6e-84 317.4 439 70.2
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 4.4e-84 316.6 423 71.6
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 4.4e-84 316.6 425 61.2
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 1.3e-83 315.1 440 69.5
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 2.9e-83 313.9 434 69.6
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 3.8e-83 313.5 434 70.5
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 4.9e-83 313.2 438 68.3
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 6.4e-83 312.8 422 71.3
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.1e-82 312.0 409 72.1
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.1e-82 312.0 409 72.4
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 1.9e-82 311.2 434 70.7
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 1.9e-82 311.2 434 69.8
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.6e-81 308.1 438 70.1
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 2.1e-81 307.8 438 70.1
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 6.0e-81 306.2 415 71.6
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 3.9e-80 303.5 401 72.3
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 9.6e-79 298.9 438 64.6
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 7.6e-76 289.3 451 65.2
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 4.2e-74 283.5 439 49.0
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 2.7e-73 280.8 440 66.1
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 2.7e-73 280.8 434 65.2
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.9e-71 274.6 521 49.3
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 4.3e-71 273.5 409 68.5
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 7.4e-63 246.1 235 56.6
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 7.4e-63 246.1 390 63.1
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 1.8e-61 241.5 436 60.8
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 2.6e-52 211.1 226 51.3
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 1.4e-50 205.3 190 55.8
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.0e-40 172.6 374 62.3
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 4.1e-37 160.6 270 77.8
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 2.0e-36 158.3 95 78.9
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 2.2e-35 154.8 95 76.8
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 2.9e-35 154.5 95 75.8
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 6.5e-35 153.3 95 78.9
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 5.2e-32 143.7 132 52.3
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 1.1e-31 142.5 95 70.5
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 1.5e-31 142.1 95 72.6
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.7e-27 128.6 137 53.3
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 1.7e-27 128.6 433 53.8
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 6.1e-25 120.2 72 79.2
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 8.8e-24 116.3 70 75.7
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.8e-22 111.3 67 76.1
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 7.0e-21 106.7 63 74.6
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 2.5e-18 98.2 416 52.6


User provided reference genes

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