Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.112 Carica papaya HOM05D002498 ORTHO05D002553 3.7e-48 196.1 278 100.0
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 4.0e-26 122.9 111 64.0
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 5.2e-26 122.5 112 66.1
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 3.4e-25 119.8 107 69.2
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 1.3e-24 117.9 111 60.4
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 1.3e-24 117.9 111 60.4
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 6.3e-24 115.5 111 65.8
BcaNung06974 Brassica carinata HOM05D002498 ORTHO05D002553 1.4e-23 114.4 109 67.0
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.4e-23 114.4 113 64.6
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.4e-23 114.4 113 69.9
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 1.2e-22 111.3 111 66.7
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 1.2e-22 111.3 126 65.9
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 4.5e-22 109.4 116 62.1
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 4.5e-22 109.4 116 62.1
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 4.5e-22 109.4 124 62.1
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.0e-21 108.2 115 66.1
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 1.7e-21 107.5 115 60.9
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 2.3e-21 107.1 117 65.0
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 6.6e-21 105.5 115 65.2
Sabra01G0141500 Salix brachista HOM05D002498 ORTHO05D002553 6.6e-21 105.5 113 61.9
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 9.5e-20 101.7 114 58.8
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 2.1e-19 100.5 120 67.5
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 2.1e-19 100.5 122 57.4
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 3.6e-19 99.8 111 65.8
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 3.6e-19 99.8 103 64.1
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 1.8e-18 97.4 111 59.5
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 3.4e-17 93.2 124 60.5
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 7.5e-17 92.0 114 57.9
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 9.8e-17 91.7 108 60.2
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 1.7e-16 90.9 116 50.9
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 2.9e-16 90.1 99 60.6
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 3.7e-16 89.7 76 64.5
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 6.4e-16 89.0 120 61.7
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 6.4e-16 89.0 120 61.7
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 1.1e-15 88.2 114 56.1
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.1e-15 88.2 120 61.7
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 1.9e-15 87.4 117 58.1
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 1.9e-15 87.4 107 62.6
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 1.9e-15 87.4 117 60.7
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 2.4e-15 87.0 122 53.3
Sabra03G0037700 Salix brachista HOM05D002498 ORTHO05D002553 3.2e-15 86.7 92 60.9
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 4.1e-15 86.3 115 55.7
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 4.1e-15 86.3 115 55.7
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 5.4e-15 85.9 117 61.5
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 2.0e-14 84.0 110 59.1
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 1.0e-13 81.6 114 56.1
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.0e-13 81.6 123 49.6
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 1.0e-13 81.6 129 55.0
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 1.3e-13 81.3 107 54.2
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 3.9e-13 79.7 129 48.8
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 9.5e-12 75.1 110 50.0
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 2.1e-11 73.9 106 50.9
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 2.8e-11 73.6 112 50.9
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 2.8e-11 73.6 117 59.0
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.6e-11 73.2 112 57.1
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 3.6e-11 73.2 66 59.1
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 1.1e-10 71.6 105 50.5
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 1.4e-10 71.2 114 51.8
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 1.8e-10 70.9 127 44.1
Lj9P523T21 Lonicera japonica HOM05D002498 ORTHO05D002553 3.1e-10 70.1 106 52.8
BcaC02g11374 Brassica carinata HOM05D003322 ORTHO05D039468 8.9e-10 68.6 87 49.4
C04p16470 Brassica napus HOM05D002498 ORTHO05D039468 8.9e-10 68.6 87 49.4
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.5e-09 67.8 115 47.8
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 4.4e-09 66.2 128 43.8
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 9.8e-09 65.1 66 59.1
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 9.8e-09 65.1 106 52.8
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 1.3e-08 64.7 88 53.4
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 1.3e-08 64.7 126 43.7
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 1.7e-08 64.3 135 39.3
Lj5C37T8 Lonicera japonica HOM05D002498 ORTHO05D002553 1.4e-07 61.2 106 41.5
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.4e-07 61.2 97 50.5
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 9.2e-07 58.5 105 46.7
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 1.2e-06 58.2 103 56.3
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 1.2e-06 58.2 108 43.5
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 1.2e-06 58.2 108 43.5
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 2.1e-06 57.4 110 42.7
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 3.5e-06 56.6 194 32.0
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 4.6e-06 56.2 118 41.5


User provided reference genes

Program Settings