Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc244.9 Carica papaya HOM05D001810 ORTHO05D003876 2.8e-28 127.9 64 100.0
Gohir.A06G106800 Gossypium hirsutum HOM05D001810 ORTHO05D003876 8.3e-12 73.2 58 65.5
Potri.005G174400 Populus trichocarpa HOM05D001810 ORTHO05D003876 2.4e-11 71.6 58 62.1
CiPaw.07G214500 Carya illinoinensis HOM05D001810 ORTHO05D003876 2.7e-10 68.2 58 65.5
Manes.16G136700 Manihot esculenta HOM05D001810 ORTHO05D003876 2.7e-10 68.2 57 59.6
Ca_15678_v3 Cicer arietinum L. HOM05D001810 ORTHO05D003876 3.5e-10 67.8 57 59.6
Medtr3g108730 Medicago truncatula HOM05D001810 ORTHO05D003876 3.5e-10 67.8 45 71.1
Thecc.09G005100 Theobroma cacao HOM05D001810 ORTHO05D003876 3.5e-10 67.8 52 71.2
TPR.G12495 Trifolium pratense HOM05D001810 ORTHO05D003876 3.5e-10 67.8 45 66.7
COL.COLO4_18611 Corchorus olitorius HOM05D001810 ORTHO05D003876 6.0e-10 67.0 56 58.9
Gohir.D06G109000 Gossypium hirsutum HOM05D001810 ORTHO05D003876 7.8e-10 66.6 58 62.1
Gorai.010G123800 Gossypium raimondii HOM05D001810 ORTHO05D003876 1.0e-09 66.2 58 62.1
Duzib168G0090 Durio zibethinus HOM05D001810 ORTHO05D003876 1.3e-09 65.9 56 66.1
Sabra05G0131400 Salix brachista HOM05D001810 ORTHO05D003876 1.3e-09 65.9 58 55.2
Phvul.009G100233 Phaseolus vulgaris HOM05D001810 ORTHO05D003876 1.7e-09 65.5 67 53.7
Prupe.1G462200 Prunus persica HOM05D001810 ORTHO05D003876 2.3e-09 65.1 53 58.5
Rhsim08G0250000 Rhododendron simsii HOM05D001810 ORTHO05D003876 2.3e-09 65.1 62 50.0
Rhsim07G0207900 Rhododendron simsii HOM05D000266 ORTHO05D003876 3.0e-09 64.7 62 48.4
Rhsim07G0208000 Rhododendron simsii HOM05D000266 ORTHO05D003876 3.0e-09 64.7 62 48.4
Rhsim07G0208100 Rhododendron simsii HOM05D000266 ORTHO05D000819 3.0e-09 64.7 62 48.4
vmacro06801 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 3.0e-09 64.7 47 63.8
QL05p084482 Quercus lobata HOM05D001810 ORTHO05D003876 6.6e-09 63.5 57 50.9
Eucgr.C02104 Eucalyptus grandis HOM05D001810 ORTHO05D003876 8.6e-09 63.2 39 71.8
THA.LOC104803879 Tarenaya hassleriana HOM05D001810 ORTHO05D003876 1.1e-08 62.8 37 81.1
FAN20G1539 Fragaria x ananassa HOM05D001810 ORTHO05D003876 1.5e-08 62.4 57 54.4
QL05p084549 Quercus lobata HOM05D001810 ORTHO05D003876 1.5e-08 62.4 56 51.8
QL05p084856 Quercus lobata HOM05D001810 ORTHO05D003876 1.5e-08 62.4 56 51.8
CSS0008124 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 1.9e-08 62.0 60 46.7
QL05p084923 Quercus lobata HOM05D001810 ORTHO05D003876 1.9e-08 62.0 56 51.8
arahy.Tifrunner.gnm1.ann1.PFN72X Arachis hypogaea HOM05D001810 ORTHO05D005662 3.3e-08 61.2 45 60.0
Duzib235G1221 Durio zibethinus HOM05D001810 ORTHO05D005662 3.3e-08 61.2 57 50.9
FvH4_2g30690 Fragaria vesca HOM05D001810 ORTHO05D003876 3.3e-08 61.2 57 54.4
FAN24G2833 Fragaria x ananassa HOM05D001810 ORTHO05D003876 3.3e-08 61.2 57 54.4
Actinidia21885 Actinidia chinensis HOM05D001810 ORTHO05D003876 4.3e-08 60.8 60 50.0
MD15G1110000 Malus domestica HOM05D001810 ORTHO05D003876 4.3e-08 60.8 43 65.1
Sopen08g002120 Solanum pennellii HOM05D001810 ORTHO05D003876 4.3e-08 60.8 41 73.2
CSS0035377 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 5.6e-08 60.5 60 46.7
Cfa002155 Carpinus fangiana HOM05D001810 ORTHO05D003876 5.6e-08 60.5 45 57.8
Cc04_g00170 Coffea canephora HOM05D001810 ORTHO05D003876 5.6e-08 60.5 56 48.2
Haze_16256 Corylus avellana HOM05D001810 ORTHO05D003876 5.6e-08 60.5 45 57.8
Nitab4.5_0003259g0090 Nicotiana tabacum HOM05D001810 ORTHO05D003876 5.6e-08 60.5 59 59.3
Os02g0727500 Oryza sativa ssp. japonica HOM05D001810 ORTHO05D003876 5.6e-08 60.5 57 52.6
Peaxi162Scf00045g01524 Petunia axillaris HOM05D001810 ORTHO05D003876 5.6e-08 60.5 58 55.2
QL03p005885 Quercus lobata HOM05D001810 ORTHO05D003876 5.6e-08 60.5 56 50.0
QL03p006486 Quercus lobata HOM05D001810 ORTHO05D003876 5.6e-08 60.5 56 50.0
Rhsim03G0090500 Rhododendron simsii HOM05D001810 ORTHO05D003876 5.6e-08 60.5 57 50.9
Rhsim12G0215300 Rhododendron simsii HOM05D001810 ORTHO05D003876 5.6e-08 60.5 57 50.9
Zm00001eb186960 Zea mays HOM05D001810 ORTHO05D003876 5.6e-08 60.5 53 50.9
Cpa.g.sc155.14 Carica papaya HOM05D001810 ORTHO05D003876 7.3e-08 60.1 44 63.6
Glyma.08G224300 Glycine max HOM05D001810 ORTHO05D003876 7.3e-08 60.1 51 52.9
Manes.14G008100 Manihot esculenta HOM05D001810 ORTHO05D003876 7.3e-08 60.1 61 49.2
Phvul.010G163800 Phaseolus vulgaris HOM05D001810 ORTHO05D003876 7.3e-08 60.1 59 49.2
Hund05674 Selenicereus undatus HOM05D001810 ORTHO05D003876 7.3e-08 60.1 56 48.2
HPP92_015317 Vanilla planifolia HOM05D001810 ORTHO05D003876 7.3e-08 60.1 58 48.3
Gohir.D05G115100 Gossypium hirsutum HOM05D001810 ORTHO05D003876 9.5e-08 59.7 57 52.6
Gorai.009G119200 Gossypium raimondii HOM05D001810 ORTHO05D003876 9.5e-08 59.7 57 52.6
Thecc.06G057700 Theobroma cacao HOM05D001810 ORTHO05D003876 9.5e-08 59.7 57 50.9
VMungo0331G1664 Vigna mungo HOM05D001810 ORTHO05D003876 1.2e-07 59.3 61 47.5
Zm00001eb360860 Zea mays HOM05D001810 ORTHO05D003876 1.2e-07 59.3 40 65.0
Migut.A00444 Erythranthe guttata HOM05D001810 ORTHO05D003876 1.6e-07 58.9 37 73.0
Lj3g0014374 Lotus japonicus HOM05D001810 ORTHO05D003876 1.6e-07 58.9 44 59.1
Lalb_Chr01g0011711 Lupinus albus HOM05D001810 ORTHO05D003876 1.6e-07 58.9 58 50.0
Sc15g0001110 Simmondsia chinensis HOM05D001810 ORTHO05D003876 1.6e-07 58.9 50 52.0
THA.LOC104812330 Tarenaya hassleriana HOM05D001810 ORTHO05D003876 1.6e-07 58.9 63 49.2
vmacro17966 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 1.6e-07 58.9 57 50.9
Zm00001eb189670 Zea mays HOM05D001810 ORTHO05D003876 1.6e-07 58.9 59 47.5
Zm00001eb189700 Zea mays HOM05D001810 ORTHO05D003876 1.6e-07 58.9 59 47.5
Zm00001eb229720 Zea mays HOM05D001810 ORTHO05D003876 1.6e-07 58.9 40 65.0
Dinv37779 Davidia involucrata HOM05D001810 ORTHO05D003876 2.1e-07 58.5 43 60.5
Glyma.07G002500 Glycine max HOM05D001810 ORTHO05D003876 2.1e-07 58.5 51 51.0
PSO170G2381 Papaver somniferum HOM05D001810 ORTHO05D003876 2.1e-07 58.5 64 45.3
PGR031G1504 Punica granatum HOM05D001810 ORTHO05D003876 2.1e-07 58.5 53 52.8
GSVIVG01029544001 Vitis vinifera HOM05D001810 ORTHO05D003876 2.1e-07 58.5 43 60.5
Zm00001eb229740 Zea mays HOM05D001810 ORTHO05D003876 2.1e-07 58.5 40 65.0
Aqoxy7G02764 Aquilegia oxysepala HOM05D001810 ORTHO05D003876 2.8e-07 58.2 42 61.9
CDE02G3623 Ceratophyllum demersum HOM05D001810 ORTHO05D003876 2.8e-07 58.2 46 56.5
Ca_20968_v3 Cicer arietinum L. HOM05D001810 ORTHO05D003876 2.8e-07 58.2 44 59.1
ClCG05G017450 Citrullus lanatus HOM05D001810 ORTHO05D003876 2.8e-07 58.2 57 56.1
MELO3C003642.2 Cucumis melo HOM05D001810 ORTHO05D003876 2.8e-07 58.2 54 57.4
Medtr4g005440 Medicago truncatula HOM05D001810 ORTHO05D003876 2.8e-07 58.2 52 51.9
TAR626G1359 Trochodendron aralioides HOM05D001810 ORTHO05D003876 2.8e-07 58.2 57 47.4
arahy.Tifrunner.gnm1.ann1.02QZYL Arachis hypogaea HOM05D001810 ORTHO05D005662 3.6e-07 57.8 45 55.6
MELO3C026711.2 Cucumis melo HOM05D001810 ORTHO05D003876 3.6e-07 57.8 57 47.4
CsaV3_3G030510 Cucumis sativus L. HOM05D001810 ORTHO05D003876 3.6e-07 57.8 57 47.4
Prupe.3G022600 Prunus persica HOM05D001810 ORTHO05D003876 3.6e-07 57.8 45 55.6
RcHm_v2.0_Chr2g0149551 Rosa chinensis HOM05D001810 ORTHO05D003876 3.6e-07 57.8 45 57.8
Sed0017750 Sechium edule HOM05D001810 ORTHO05D003876 3.6e-07 57.8 45 55.6
Gohir.A05G114700 Gossypium hirsutum HOM05D001810 ORTHO05D003876 4.7e-07 57.4 57 50.9
Atru.chr1.2655 Acer truncatum HOM05D001810 ORTHO05D005662 6.2e-07 57.0 66 50.0
Ciclev10033044m.g Citrus clementina HOM05D001810 ORTHO05D003876 6.2e-07 57.0 44 61.4
Nn8g40872 Nelumbo nucifera HOM05D001810 ORTHO05D003876 6.2e-07 57.0 57 50.9
Psat7g264280 Pisum sativum HOM05D001810 ORTHO05D003876 6.2e-07 57.0 44 56.8
TPR.G38727 Trifolium pratense HOM05D001810 ORTHO05D003876 6.2e-07 57.0 44 56.8
Zm00001eb189640 Zea mays HOM05D001810 ORTHO05D003876 6.2e-07 57.0 59 45.8
Zm00001eb189730 Zea mays HOM05D001810 ORTHO05D003876 6.2e-07 57.0 59 45.8
Zm00001eb189760 Zea mays HOM05D001810 ORTHO05D003876 6.2e-07 57.0 59 45.8
Zm00001eb189800 Zea mays HOM05D001810 ORTHO05D003876 6.2e-07 57.0 59 45.8
CAN.G1364.5 Capsicum annuum HOM05D001810 ORTHO05D003876 8.1e-07 56.6 37 70.3
ClCG07G014650 Citrullus lanatus HOM05D001810 ORTHO05D003876 8.1e-07 56.6 57 45.6
PSO144G0068 Papaver somniferum HOM05D001810 ORTHO05D003876 8.1e-07 56.6 64 43.8
RcHm_v2.0_Chr6g0312211 Rosa chinensis HOM05D001810 ORTHO05D003876 8.1e-07 56.6 48 58.3
SGA_v2.0_scaffold27G11665 Striga asiatica HOM05D001810 ORTHO05D003876 8.1e-07 56.6 39 69.2
AUR62020628 Chenopodium quinoa HOM05D001810 ORTHO05D003876 1.1e-06 56.2 63 52.4
CsaV3_3G046950 Cucumis sativus L. HOM05D001810 ORTHO05D003876 1.1e-06 56.2 52 59.6
Aa31LG7G1260 Aethionema arabicum HOM05D001810 ORTHO05D003876 1.4e-06 55.8 39 61.5
AT1G16810 Arabidopsis thaliana HOM05D001810 ORTHO05D003876 1.4e-06 55.8 39 61.5
A06p12730 Brassica napus HOM05D001810 ORTHO05D003876 1.4e-06 55.8 57 49.1
CiPaw.01G091100 Carya illinoinensis HOM05D001810 ORTHO05D003876 1.4e-06 55.8 57 47.4
FAN15G3686 Fragaria x ananassa HOM05D001810 ORTHO05D003876 1.4e-06 55.8 52 51.9
Hma1.2p1_3612F.1_g337040 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 1.4e-06 55.8 60 46.7
Zm00001eb189590 Zea mays HOM05D001810 ORTHO05D003876 1.4e-06 55.8 59 45.8
Thhalv10009062m.g Eutrema salsugineum HOM05D001810 ORTHO05D003876 1.8e-06 55.5 63 47.6
Zm00001eb140150 Zea mays HOM05D001810 ORTHO05D003876 1.8e-06 55.5 59 45.8
Zm00001eb253430 Zea mays HOM05D001810 ORTHO05D003876 1.8e-06 55.5 40 62.5
CAN.G484.40 Capsicum annuum HOM05D001810 ORTHO05D003876 2.3e-06 55.1 43 51.2
AUR62038755 Chenopodium quinoa HOM05D001810 ORTHO05D003876 2.3e-06 55.1 54 53.7
MBI18_g21785_MAGBIO Magnolia biondii HOM05D001810 ORTHO05D003876 2.3e-06 55.1 45 53.3
Oeu038372.1 Olea europaea HOM05D001810 ORTHO05D003876 2.3e-06 55.1 59 44.1
Sabra10G0197100 Salix brachista HOM05D001810 ORTHO05D003876 2.3e-06 55.1 45 53.3
unitig_0.g1638 Utricularia gibba HOM05D001810 ORTHO05D003876 2.3e-06 55.1 45 53.3
Zm00001eb189660 Zea mays HOM05D001810 ORTHO05D003876 2.3e-06 55.1 59 44.1
ATR0691G256 Amborella trichopoda HOM05D001810 ORTHO05D003876 3.1e-06 54.7 39 64.1
BraA06t24433Z Brassica rapa HOM05D001810 ORTHO05D003876 3.1e-06 54.7 55 50.9
Eucgr.F04029 Eucalyptus grandis HOM05D001810 ORTHO05D003876 3.1e-06 54.7 43 53.5
Zm00001eb189620 Zea mays HOM05D001810 ORTHO05D003876 3.1e-06 54.7 40 57.5
BcaC05g25537 Brassica carinata HOM05D001810 ORTHO05D003876 4.0e-06 54.3 52 51.9
BolC5t30218H Brassica oleracea HOM05D001810 ORTHO05D003876 4.0e-06 54.3 52 51.9
Hma1.2p1_0517F.1_g170810 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 4.0e-06 54.3 60 45.0
TWI18G1195 Tripterygium wilfordii HOM05D001810 ORTHO05D005662 4.0e-06 54.3 44 56.8
Pp3c10_8030 Physcomitrium patens HOM05D001810 ORTHO05D003876 5.2e-06 53.9 55 49.1
EL10Ac2g03718 Beta vulgaris HOM05D001810 ORTHO05D003876 6.8e-06 53.5 43 60.5
FAN02G1520 Fragaria x ananassa HOM05D001810 ORTHO05D003876 6.8e-06 53.5 56 44.6
FAN09G1684 Fragaria x ananassa HOM05D001810 ORTHO05D003876 6.8e-06 53.5 56 44.6
Potri.010G253400 Populus trichocarpa HOM05D001810 ORTHO05D003876 6.8e-06 53.5 45 53.3
SHI38233 Sapria himalayana HOM05D001810 ORTHO05D003876 6.8e-06 53.5 58 46.6
BcaB02g06674 Brassica carinata HOM05D001810 ORTHO05D003876 8.9e-06 53.1 56 46.4


User provided reference genes

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