Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.4e-244 849.4 469 100.0
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.9e-169 599.7 470 68.1
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.4e-169 599.4 484 66.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.4e-169 599.4 471 69.0
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 2.1e-168 596.3 471 68.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 4.6e-168 595.1 470 68.1
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 7.9e-168 594.3 471 68.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.9e-168 594.3 471 68.4
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.0e-167 594.0 470 67.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.3e-167 593.6 470 67.7
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-167 593.6 471 68.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.8e-167 593.2 472 67.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.8e-167 593.2 473 68.1
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 3.3e-166 589.0 519 63.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.6e-166 587.4 471 68.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.1e-165 584.3 471 67.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 8.1e-165 584.3 474 67.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.4e-164 583.6 471 66.5
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.4e-164 582.8 471 67.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.8e-163 578.2 471 67.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.8e-163 578.2 476 67.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.7e-162 576.6 471 66.9
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.4e-161 573.5 477 66.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-160 570.5 472 66.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 3.5e-160 568.9 470 65.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.6e-160 568.5 471 71.1
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.0e-160 568.2 474 65.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 3.9e-159 565.5 474 65.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.1e-158 563.9 479 64.9
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.9e-158 563.1 471 65.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 3.3e-158 562.4 469 65.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-157 560.5 471 65.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-157 560.1 473 66.4
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.8e-157 559.3 471 64.8
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 8.2e-157 557.8 479 64.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.1e-156 557.4 470 64.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.4e-156 557.0 483 64.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.4e-156 557.0 480 65.2
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.8e-156 556.6 475 65.5
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 9.0e-156 554.3 475 69.5
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.2e-155 553.9 472 65.5
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-155 553.9 472 65.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.0e-154 550.8 472 66.1
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.3e-154 550.4 463 65.0
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.3e-154 550.4 470 64.3
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.8e-154 548.9 471 65.6
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 4.9e-154 548.5 485 63.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.1e-153 547.4 478 63.6
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.1e-153 547.4 477 63.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-153 547.0 461 64.2
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.9e-153 546.6 477 63.7
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.5e-153 545.0 471 62.4
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.7e-152 542.7 479 64.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 6.0e-152 541.6 479 63.7
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 6.0e-152 541.6 474 63.7
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 6.7e-151 538.1 471 62.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 8.7e-151 537.7 473 62.2
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 4.3e-150 535.4 521 58.5
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.3e-150 535.4 483 62.7
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 7.4e-150 534.6 474 62.9
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.3e-149 533.9 472 62.3
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.3e-149 533.9 471 63.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.3e-149 533.9 471 61.8
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.8e-149 532.7 521 58.3
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 4.8e-149 531.9 470 62.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.8e-148 530.0 500 61.2
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.4e-148 529.6 473 63.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.1e-148 528.9 472 66.7
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.3e-148 528.5 470 61.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.2e-147 527.3 482 62.2
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.2e-147 527.3 482 62.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.2e-147 527.3 471 60.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.2e-147 527.3 481 61.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.0e-147 526.6 471 61.1
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-146 523.9 481 61.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.9e-146 522.7 481 62.2
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-146 522.7 474 62.9
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-146 522.7 474 62.9
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.8e-146 522.3 468 62.0
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.2e-145 518.8 470 61.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 3.6e-144 515.8 481 61.7
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.0e-143 514.2 476 61.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.1e-143 511.9 463 61.1
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 4.3e-142 508.8 469 60.1
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.4e-142 508.1 472 65.5
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 6.9e-140 501.5 471 61.4
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.0e-139 500.0 470 59.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.0e-138 497.7 472 59.3
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.3e-138 497.3 459 61.9
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.2e-138 496.5 469 58.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.2e-137 492.7 470 59.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 3.2e-137 492.7 473 59.2
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.7e-133 480.3 471 58.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.1e-132 476.1 469 57.6
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 6.5e-130 468.4 471 56.9
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.4e-129 467.2 474 56.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.2e-128 464.2 473 56.9
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.0e-127 461.1 462 58.7
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 4.4e-126 455.7 496 53.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.7e-125 452.6 469 59.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 7.0e-124 448.4 461 56.4
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.6e-123 446.4 471 56.3
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 4.2e-121 439.1 463 55.5
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 6.1e-120 435.3 472 54.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 5.2e-119 432.2 402 61.2
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.7e-117 427.2 470 53.6
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.5e-115 419.1 472 54.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 9.4e-113 411.4 469 53.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.6e-112 410.6 476 52.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.6e-112 409.5 406 56.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.5e-107 392.9 508 48.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.2e-105 386.0 318 66.4
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.0e-103 379.4 471 50.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.6e-102 376.7 469 50.7
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.4e-102 376.3 404 53.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.9e-101 372.5 405 53.8
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.3e-97 359.4 460 48.7
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 8.3e-93 345.1 343 58.6
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 8.3e-93 345.1 328 58.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.6e-91 340.9 467 48.0
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-90 336.7 343 57.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.2e-88 331.3 525 43.6
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.7e-88 329.3 512 44.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.1e-79 300.1 473 45.9
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.4e-78 296.6 472 45.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 8.3e-77 292.0 220 71.4
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.4e-71 273.9 169 79.3
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.4e-62 243.0 386 45.9
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 7.1e-60 235.7 284 53.5
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 7.1e-60 235.7 284 53.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-55 221.1 137 78.1
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.2e-48 196.1 366 39.3
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.2e-40 169.1 218 45.4
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.8e-38 162.9 344 38.7
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 4.6e-35 153.3 109 68.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.8e-34 151.4 439 36.2
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 8.7e-34 149.1 185 49.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.3e-33 147.1 74 91.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-32 144.4 91 76.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 3.7e-32 143.7 134 57.5
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 3.7e-32 143.7 134 57.5
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.1e-31 140.6 83 80.7
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.7e-29 134.8 122 59.0
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 8.5e-29 132.5 141 56.7
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.4e-28 131.7 69 88.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.6e-27 128.3 94 68.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.6e-27 127.1 68 86.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.9e-26 123.6 293 36.9
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.0e-21 109.0 520 27.1
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 6.5e-13 79.7 96 50.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.2e-12 77.4 62 61.3
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.3e-10 71.2 128 48.4
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 4.0e-10 70.5 75 54.7
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 2.0e-06 58.2 150 29.3
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 3.5e-06 57.4 128 29.7


User provided reference genes

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