Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 4.0e-78 294.7 144 100.0
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 8.6e-49 197.2 111 83.8
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 8.6e-49 197.2 124 79.0
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 1.1e-48 196.8 111 82.9
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 1.1e-48 196.8 111 84.7
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 1.9e-48 196.1 111 83.8
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 7.3e-48 194.1 111 83.8
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 2.8e-47 192.2 111 82.9
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 2.8e-47 192.2 112 82.1
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 3.6e-47 191.8 111 83.8
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 4.7e-47 191.4 111 81.1
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 4.7e-47 191.4 111 81.1
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 6.2e-47 191.0 111 81.1
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 6.2e-47 191.0 112 82.1
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 1.1e-46 190.3 112 82.1
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.4e-46 189.9 112 83.9
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.8e-46 189.5 111 81.1
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.8e-46 189.5 111 81.1
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 1.8e-46 189.5 111 81.1
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 3.1e-46 188.7 112 81.2
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 4.0e-46 188.3 111 81.1
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 4.0e-46 188.3 110 80.9
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 6.8e-46 187.6 112 81.2
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 8.9e-46 187.2 110 81.8
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.2e-45 186.8 111 78.4
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 1.2e-45 186.8 111 80.2
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 1.2e-45 186.8 111 78.4
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 1.5e-45 186.4 111 77.5
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.5e-45 186.4 111 77.5
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.5e-45 186.4 111 77.5
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.5e-45 186.4 113 80.5
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 1.5e-45 186.4 111 81.1
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 2.0e-45 186.0 111 78.4
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 2.0e-45 186.0 110 79.1
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.0e-45 186.0 124 73.4
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.0e-45 186.0 124 73.4
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 2.0e-45 186.0 110 80.0
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 2.0e-45 186.0 110 80.0
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 3.4e-45 185.3 112 77.7
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 3.4e-45 185.3 111 76.6
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 3.4e-45 185.3 112 79.5
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 4.4e-45 184.9 111 76.6
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 4.4e-45 184.9 111 80.2
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 4.4e-45 184.9 110 79.1
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 5.8e-45 184.5 111 78.4
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 7.5e-45 184.1 110 77.3
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 9.8e-45 183.7 132 71.2
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 2.9e-44 182.2 124 74.2
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 3.7e-44 181.8 111 76.6
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 3.7e-44 181.8 111 73.9
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 4.9e-44 181.4 111 76.6
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 4.9e-44 181.4 110 79.1
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 6.4e-44 181.0 110 78.2
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 8.3e-44 180.6 125 72.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 8.3e-44 180.6 123 71.5
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.1e-43 180.3 111 78.4
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.4e-43 179.9 111 79.3
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 1.4e-43 179.9 111 77.5
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 2.4e-43 179.1 110 76.4
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.4e-43 179.1 112 77.7
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 4.1e-43 178.3 111 77.5
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 4.1e-43 178.3 110 75.5
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 4.1e-43 178.3 112 74.1
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 4.1e-43 178.3 111 77.5
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.2e-42 176.8 104 78.8
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 1.6e-42 176.4 110 77.3
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 2.1e-42 176.0 111 77.5
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 2.7e-42 175.6 107 76.6
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 2.7e-42 175.6 107 76.6
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 6.0e-42 174.5 125 71.2
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 1.0e-41 173.7 111 73.9
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 1.3e-41 173.3 111 74.8
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.3e-41 173.3 103 78.6
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.7e-41 172.9 121 73.6
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.7e-41 172.9 112 72.3
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 3.0e-41 172.2 110 75.5
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 5.0e-41 171.4 111 75.7
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 5.0e-41 171.4 111 72.1
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 6.6e-41 171.0 110 72.7
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 3.3e-40 168.7 99 78.8
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 3.3e-40 168.7 99 78.8
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 3.3e-40 168.7 99 78.8
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 3.3e-40 168.7 111 70.3
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 1.6e-39 166.4 111 73.9
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 1.4e-38 163.3 103 75.7
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 3.1e-38 162.2 111 68.5
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 3.1e-38 162.2 111 71.2
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 3.4e-37 158.7 106 71.7
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.7e-36 156.4 93 77.4
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 3.2e-35 152.1 93 74.2
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 6.0e-34 147.9 93 73.1
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 1.3e-33 146.7 105 64.8
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 2.8e-31 139.0 93 71.0
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 3.1e-30 135.6 105 65.7
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 7.6e-29 131.0 72 81.9
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 2.9e-28 129.0 100 65.0
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 6.4e-28 127.9 101 62.4
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 1.9e-27 126.3 93 67.7
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 3.5e-26 122.1 113 52.2
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 1.3e-25 120.2 97 63.9
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 9.6e-24 114.0 95 57.9
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 2.8e-23 112.5 85 61.2
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 6.2e-23 111.3 85 61.2
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 4.4e-21 105.1 84 58.3
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 5.4e-19 98.2 82 57.3
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 7.8e-18 94.4 95 50.5
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 5.1e-17 91.7 48 83.3
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 1.3e-15 87.0 86 51.2
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 2.9e-12 75.9 82 48.8


User provided reference genes

Program Settings