Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 9.4e-228 793.1 383 100.0
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 2.2e-152 542.7 387 69.8
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 1.9e-151 539.7 367 69.2
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 8.7e-149 530.8 383 65.8
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.6e-147 526.6 372 69.1
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 8.2e-147 524.2 389 66.1
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 9.0e-146 520.8 367 68.4
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.6e-145 519.2 378 68.0
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 3.4e-145 518.8 376 68.1
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 5.8e-145 518.1 378 67.7
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.1e-143 513.8 376 67.0
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.5e-143 512.7 382 67.0
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 3.2e-143 512.3 365 67.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 7.9e-142 507.7 375 65.6
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 8.7e-141 504.2 363 67.8
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.1e-138 497.3 357 67.2
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 1.8e-138 496.5 384 64.8
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 2.6e-137 492.7 366 65.8
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.5e-137 491.9 389 63.0
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 7.7e-137 491.1 336 69.6
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.2e-135 485.7 364 65.4
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 4.2e-135 485.3 328 69.5
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.5e-135 485.0 362 65.2
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 7.2e-135 484.6 349 66.8
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 7.2e-135 484.6 394 60.2
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 9.4e-135 484.2 355 66.2
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-134 483.8 333 68.8
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.2e-134 483.8 382 62.8
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.6e-134 483.4 360 64.2
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.6e-134 483.4 329 67.5
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 7.9e-134 481.1 355 65.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 7.9e-134 481.1 362 65.2
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.4e-133 480.3 352 65.6
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.4e-133 480.3 364 64.3
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.8e-133 479.9 372 63.7
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 5.1e-133 478.4 384 61.2
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 6.7e-133 478.0 356 65.4
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 6.7e-133 478.0 364 63.5
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 6.7e-133 478.0 348 66.4
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 8.8e-133 477.6 373 64.6
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 8.8e-133 477.6 348 65.5
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 8.8e-133 477.6 367 64.6
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.5e-132 476.9 346 67.1
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 5.7e-132 474.9 384 62.0
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 9.7e-132 474.2 361 64.5
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.7e-131 473.4 441 56.7
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.8e-131 472.6 346 67.1
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 2.8e-131 472.6 367 64.0
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 6.3e-131 471.5 367 63.8
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 8.2e-131 471.1 333 67.3
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.4e-130 470.3 357 64.7
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 2.4e-130 469.5 361 64.5
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.1e-130 467.6 370 62.7
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.1e-130 467.6 370 62.7
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 7.7e-129 464.5 378 59.5
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.8e-128 462.2 321 67.0
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 5.0e-128 461.8 338 64.2
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.9e-127 459.9 356 62.6
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.9e-127 459.9 401 58.9
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 2.5e-127 459.5 349 63.6
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 3.2e-127 459.1 372 61.8
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 4.2e-127 458.8 370 61.6
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 5.5e-127 458.4 386 60.6
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 5.5e-127 458.4 365 66.0
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 3.6e-126 455.7 369 59.6
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 7.9e-126 454.5 337 65.3
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.0e-125 454.1 354 63.6
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.3e-125 453.0 376 60.1
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 2.3e-125 453.0 327 66.1
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.3e-125 453.0 306 69.3
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.0e-125 452.6 355 62.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.9e-125 452.2 342 62.3
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 5.1e-125 451.8 350 64.3
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 5.1e-125 451.8 349 64.5
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 5.1e-125 451.8 363 63.1
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.1e-124 450.7 348 63.8
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.0e-124 449.9 373 61.7
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.3e-124 449.1 333 67.3
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 3.3e-124 449.1 346 63.9
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 7.4e-124 448.0 402 60.2
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 9.7e-124 447.6 357 58.8
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.4e-122 443.7 375 60.3
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 9.1e-122 441.0 322 64.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.0e-120 437.6 320 62.5
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.5e-119 433.7 357 60.5
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.5e-119 433.7 300 69.3
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.9e-119 433.3 356 59.8
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 5.5e-119 431.8 345 61.7
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 8.0e-118 427.9 347 61.4
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.0e-117 427.6 327 63.6
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 5.7e-116 421.8 359 61.3
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 2.2e-115 419.9 330 63.9
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.8e-114 416.8 370 56.8
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 3.1e-114 416.0 350 60.9
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 4.1e-114 415.6 281 70.8
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.3e-112 410.6 282 68.4
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 5.0e-112 408.7 271 71.2
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 8.5e-112 407.9 279 67.4
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 9.8e-108 394.4 370 57.0
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.1e-102 376.7 344 55.5
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 2.7e-102 376.3 304 62.2
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 5.2e-101 372.1 359 52.9
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 9.8e-100 367.9 353 53.5
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.2e-99 366.7 328 56.7
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 8.3e-99 364.8 329 57.1
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.7e-97 359.8 300 57.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 2.3e-96 356.7 396 49.7
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 6.1e-94 348.6 305 54.4
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 4.1e-90 335.9 298 55.0
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 2.3e-85 320.1 266 61.7
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 1.3e-80 304.3 359 48.7
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 7.5e-76 288.5 301 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 1.1e-71 274.6 213 59.6
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.4e-69 267.7 225 57.3
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.6e-68 263.5 271 51.3
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.1e-63 248.1 286 42.3
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.5e-63 246.9 299 41.5
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 6.2e-62 242.3 296 43.9
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 1.7e-51 207.6 228 46.9
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.7e-49 200.3 129 72.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 7.6e-36 155.6 149 51.0
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.2e-33 148.3 90 74.4
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 6.3e-30 136.0 199 39.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 4.1e-29 133.3 85 70.6
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.1e-24 116.3 69 72.5
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 6.7e-16 89.4 93 51.6
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.3e-11 75.1 70 52.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 9.4e-10 68.9 42 66.7


User provided reference genes

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