Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2180.1 Carica papaya HOM05D005083 ORTHO05D006310 1.2e-85 319.7 151 100.0
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 4.8e-66 254.6 134 90.3
Haze_04595 Corylus avellana HOM05D005083 ORTHO05D006310 6.2e-66 254.2 134 91.0
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 2.4e-65 252.3 134 89.6
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 3.1e-65 251.9 134 88.8
Lalb_Chr03g0041081 Lupinus albus HOM05D005083 ORTHO05D006310 3.1e-65 251.9 134 88.1
TAR375G0465 Trochodendron aralioides HOM05D005083 ORTHO05D006310 4.0e-65 251.5 134 88.8
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 5.3e-65 251.1 134 90.3
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 9.0e-65 250.4 134 88.8
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 9.0e-65 250.4 134 89.6
Atru.chr4.1877 Acer truncatum HOM05D005083 ORTHO05D006310 2.0e-64 249.2 134 88.1
Duzib128G0478 Durio zibethinus HOM05D005083 ORTHO05D006310 2.0e-64 249.2 134 88.8
Thecc.05G188600 Theobroma cacao HOM05D005083 ORTHO05D006310 2.0e-64 249.2 134 87.3
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 2.6e-64 248.8 134 90.3
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 4.5e-64 248.1 134 88.1
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 4.5e-64 248.1 134 87.3
Ca_23185_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 88.1
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 88.1
Glyma.16G082900 Glycine max HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 87.3
Gorai.002G119900 Gossypium raimondii HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 88.1
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 88.1
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 9.9e-64 246.9 134 88.1
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 1.3e-63 246.5 134 87.3
Medtr8g011450 Medicago truncatula HOM05D005083 ORTHO05D006310 1.3e-63 246.5 134 88.1
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 1.7e-63 246.1 134 87.3
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 1.7e-63 246.1 134 87.3
Lj1g0009175 Lotus japonicus HOM05D005083 ORTHO05D006310 2.2e-63 245.7 134 87.3
MBI18_g24480_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 2.2e-63 245.7 134 86.6
CSS0010526 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 2.9e-63 245.4 134 88.1
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 4.9e-63 244.6 134 85.8
Gohir.D01G094500 Gossypium hirsutum HOM05D005083 ORTHO05D006310 6.4e-63 244.2 134 87.3
Actinidia06798 Actinidia chinensis HOM05D005083 ORTHO05D006310 8.4e-63 243.8 134 87.3
COL.COLO4_36604 Corchorus olitorius HOM05D005083 ORTHO05D006310 8.4e-63 243.8 134 85.8
Dinv15379 Davidia involucrata HOM05D005083 ORTHO05D006310 8.4e-63 243.8 133 87.2
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 8.4e-63 243.8 134 87.3
Sc16g0010610 Simmondsia chinensis HOM05D005083 ORTHO05D006310 1.4e-62 243.0 134 87.3
CSS0048819 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 1.9e-62 242.7 134 87.3
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 1.9e-62 242.7 134 86.6
AUR62000278 Chenopodium quinoa HOM05D005083 ORTHO05D006310 2.4e-62 242.3 134 86.6
CSS0033222 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 3.2e-62 241.9 134 87.3
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 4.2e-62 241.5 134 85.8
FAN02G1711 Fragaria x ananassa HOM05D005083 ORTHO05D006310 5.4e-62 241.1 134 85.8
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 7.1e-62 240.7 134 85.1
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 9.3e-62 240.4 134 87.3
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 9.3e-62 240.4 134 85.1
PGR119G1162 Punica granatum HOM05D005083 ORTHO05D006310 9.3e-62 240.4 134 85.1
VMungo0331G1409 Vigna mungo HOM05D005083 ORTHO05D006310 1.6e-61 239.6 134 85.1
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 2.1e-61 239.2 134 87.3
Lj4A702T41 Lonicera japonica HOM05D005083 ORTHO05D006310 2.7e-61 238.8 134 84.3
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 2.7e-61 238.8 134 85.1
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 4.6e-61 238.0 134 85.1
Rhsim05G0167600 Rhododendron simsii HOM05D005083 ORTHO05D006310 6.0e-61 237.7 134 85.1
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 1.0e-60 236.9 134 84.3
Oeu062030.2 Olea europaea HOM05D005083 ORTHO05D006310 1.0e-60 236.9 134 84.3
PSO210G3440 Papaver somniferum HOM05D005083 ORTHO05D006310 1.0e-60 236.9 134 84.3
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 1.3e-60 236.5 134 83.6
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 1.3e-60 236.5 134 83.6
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 1.8e-60 236.1 134 83.6
SalBow6G5693 Salvia bowleyana HOM05D005083 ORTHO05D006310 1.8e-60 236.1 134 85.1
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 2.3e-60 235.7 134 82.8
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 82.8
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 82.8
Solyc02g081460.4 Solanum lycopersicum HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 82.8
Sopen02g026100 Solanum pennellii HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 82.8
PGSC0003DMG400019714 Solanum tuberosum HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 82.8
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 3.0e-60 235.3 134 84.3
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 3.9e-60 235.0 134 83.6
Cc09_g04250 Coffea canephora HOM05D005083 ORTHO05D006310 3.9e-60 235.0 134 82.8
Nitab4.5_0001308g0170 Nicotiana tabacum HOM05D005083 ORTHO05D006310 3.9e-60 235.0 134 82.1
PSO832G1645 Papaver somniferum HOM05D005083 ORTHO05D006310 3.9e-60 235.0 134 83.6
CAN.G809.91 Capsicum annuum HOM05D005083 ORTHO05D006310 5.1e-60 234.6 134 82.1
Zm00001eb425980 Zea mays HOM05D005083 ORTHO05D006310 5.1e-60 234.6 134 82.8
Thhalv10012868m.g Eutrema salsugineum HOM05D005083 ORTHO05D006310 6.7e-60 234.2 134 82.8
Peaxi162Scf00253g00621 Petunia axillaris HOM05D005083 ORTHO05D006310 6.7e-60 234.2 134 81.3
vmacro11193 Vaccinium macrocarpon HOM05D005083 ORTHO05D006310 6.7e-60 234.2 137 83.2
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 1.1e-59 233.4 134 82.1
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 1.1e-59 233.4 134 82.1
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 1.1e-59 233.4 134 82.1
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 1.1e-59 233.4 134 82.1
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 1.1e-59 233.4 134 82.1
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 1.5e-59 233.0 134 82.1
Hund07372 Selenicereus undatus HOM05D005083 ORTHO05D006310 1.5e-59 233.0 135 84.4
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 2.5e-59 232.3 134 82.8
Nitab4.5_0002233g0090 Nicotiana tabacum HOM05D005083 ORTHO05D006310 3.3e-59 231.9 134 81.3
HanXRQChr14g0433021 Helianthus annuus HOM05D005083 ORTHO05D006310 9.6e-59 230.3 134 82.8
Lsat_1_v5_gn_2_27601 Lactuca sativa HOM05D005083 ORTHO05D006310 9.6e-59 230.3 134 82.8
Os04g0501700 Oryza sativa ssp. japonica HOM05D005083 ORTHO05D006310 1.3e-58 229.9 134 82.1
ATR1096G007 Amborella trichopoda HOM05D005083 ORTHO05D006310 6.2e-58 227.6 134 80.6
Eucgr.B01438 Eucalyptus grandis HOM05D005083 ORTHO05D006310 1.1e-57 226.9 134 79.1
Nitab4.5_0000842g0030 Nicotiana tabacum HOM05D005083 ORTHO05D006310 1.1e-57 226.9 134 79.1
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 2.4e-57 225.7 134 79.9
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 2.4e-57 225.7 134 82.1
Aqoxy3G04197 Aquilegia oxysepala HOM05D005083 ORTHO05D006310 3.1e-57 225.3 134 80.6
HanXRQChr03g0062031 Helianthus annuus HOM05D005083 ORTHO05D006310 4.0e-57 224.9 134 82.1
unitig_22.g6621 Utricularia gibba HOM05D005083 ORTHO05D006310 6.9e-57 224.2 134 80.6
HPP92_018347 Vanilla planifolia HOM05D005083 ORTHO05D006310 6.9e-57 224.2 134 79.9
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 3.4e-56 221.9 134 79.1
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 3.4e-56 221.9 134 79.1
SGA_v2.0_scaffold122G33218 Striga asiatica HOM05D005083 ORTHO05D006310 2.4e-54 215.7 168 66.1
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 3.0e-52 208.8 134 74.6
A10p22000 Brassica napus HOM05D005083 ORTHO05D006310 2.8e-50 202.2 120 78.3
Ah.06g195270 Amaranthus hybridus HOM05D005083 ORTHO05D006310 1.7e-47 193.0 109 84.4
BcaB08g36773 Brassica carinata HOM05D005083 ORTHO05D006310 2.9e-47 192.2 133 72.2
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 9.3e-46 187.2 120 75.0
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 5.1e-44 181.4 134 62.7
Pp3c23_1190 Physcomitrium patens HOM05D005083 ORTHO05D006310 1.1e-43 180.3 147 61.2
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 1.9e-43 179.5 147 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 5.3e-41 171.4 134 61.2
HPP92_018381 Vanilla planifolia HOM05D005083 ORTHO05D006310 1.3e-39 166.8 143 63.6
AUR62006625 Chenopodium quinoa HOM05D005083 ORTHO05D006310 1.7e-39 166.4 135 67.4
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 9.3e-38 160.6 134 56.7
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 1.9e-35 152.9 134 59.7
Pp3c13_20560 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.5e-35 152.5 136 55.1
Pp3c13_20568 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.5e-35 152.5 136 55.1
Gohir.A01G108100 Gossypium hirsutum HOM05D005083 ORTHO05D006310 8.2e-34 147.5 76 89.5
RcHm_v2.0_Chr4g0425031 Rosa chinensis HOM05D005083 ORTHO05D006310 1.4e-30 136.7 79 82.3
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 2.5e-30 136.0 76 82.9
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 3.2e-30 135.6 77 80.5
TAR362G0022 Trochodendron aralioides HOM05D005083 ORTHO05D006310 4.2e-30 135.2 74 85.1
TWI36G0321 Tripterygium wilfordii HOM05D005083 ORTHO05D006310 1.1e-27 127.1 134 53.0
MBI18_g11247_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 9.4e-22 107.5 55 87.3
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 2.8e-18 95.9 73 63.0
Cfa026615 Carpinus fangiana HOM05D005083 ORTHO05D006310 3.7e-18 95.5 134 37.3
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 1.4e-17 93.6 177 35.0
Hund03857 Selenicereus undatus HOM05D005083 ORTHO05D006310 2.4e-17 92.8 56 76.8
PRCOL_00000469 Prasinoderma coloniale HOM05D005083 ORTHO05D006310 3.2e-14 82.4 137 32.1
BraA03t14759Z Brassica rapa HOM05D005083 ORTHO05D006310 2.3e-12 76.3 45 73.3
CBR_g50761 Chara braunii HOM05D005083 ORTHO05D006310 6.3e-10 68.2 134 32.8
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 5.3e-09 65.1 159 32.7
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 2.7e-08 62.8 158 31.6
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 5.9e-08 61.6 158 31.0
PRCOL_00005400 Prasinoderma coloniale HOM05D004581 ORTHO05D006211 5.9e-08 61.6 156 27.6
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 5.9e-08 61.6 158 31.6
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 1.3e-07 60.5 158 31.0
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 1.7e-07 60.1 138 31.2
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 5.0e-07 58.5 151 30.5
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 5.0e-07 58.5 158 29.7
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 6.5e-07 58.2 155 31.0
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 1.5e-06 57.0 158 29.1
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 1.9e-06 56.6 162 28.4
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 1.9e-06 56.6 164 29.3
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 1.9e-06 56.6 164 28.7
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 3.2e-06 55.8 158 29.1
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 3.2e-06 55.8 158 29.7
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 4.2e-06 55.5 164 29.3
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 4.2e-06 55.5 164 29.3
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 4.2e-06 55.5 164 29.9
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 5.5e-06 55.1 164 28.0
Cre12.g525500 Chlamydomonas reinhardtii HOM05D005083 ORTHO05D006310 5.5e-06 55.1 118 28.8
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 5.5e-06 55.1 158 28.5
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 5.5e-06 55.1 158 28.5
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 5.5e-06 55.1 158 28.5
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 5.5e-06 55.1 158 29.1
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 7.2e-06 54.7 158 28.5
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 7.2e-06 54.7 164 29.3
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 7.2e-06 54.7 164 29.9
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 7.2e-06 54.7 84 39.3
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 7.2e-06 54.7 158 29.1


User provided reference genes

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