Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.2e-282 974.9 489 100.0
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 6.8e-106 388.7 510 48.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.9e-103 380.6 517 46.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.2e-99 367.9 519 47.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.3e-96 357.8 511 47.2
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 2.9e-96 356.7 535 46.5
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 6.4e-96 355.5 534 44.9
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.3e-90 335.9 501 44.3
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.2e-89 334.7 513 44.8
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.7e-86 323.6 505 44.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.9e-84 317.4 502 45.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.3e-83 314.7 539 44.0
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.8e-83 313.5 441 47.4
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.4e-82 310.5 539 42.5
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.4e-79 301.2 504 43.7
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 6.7e-77 292.4 292 57.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.3e-76 289.7 389 45.5
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.8e-75 287.0 389 45.2
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.1e-74 283.5 389 44.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 1.0e-72 278.5 493 41.4
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.7e-72 277.7 507 40.0
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.2e-71 273.5 529 38.6
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 3.2e-71 273.5 442 43.7
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.2e-70 271.6 479 41.3
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 2.1e-70 270.8 487 39.2
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.8e-69 267.7 487 39.0
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 8.7e-69 265.4 488 39.1
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.1e-68 265.0 305 53.8
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 6.3e-67 259.2 424 42.0
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.1e-66 258.5 505 37.8
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 1.4e-66 258.1 524 38.7
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 4.1e-66 256.5 424 41.5
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.3e-66 256.1 488 41.4
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 1.3e-64 251.5 503 38.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.2e-64 250.8 485 41.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.9e-63 247.7 504 39.3
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.2e-62 245.0 531 35.6
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.3e-61 240.7 503 37.8
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 3.0e-61 240.4 317 48.6
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.1e-60 238.4 302 49.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.5e-60 238.0 316 47.8
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 1.9e-60 237.7 372 43.8
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.5e-60 237.3 481 39.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 4.3e-60 236.5 281 51.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.3e-59 235.0 507 38.9
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.1e-58 231.9 351 43.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.1e-58 231.9 496 35.9
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.1e-58 230.3 490 35.3
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.5e-57 226.5 475 38.5
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.0e-56 225.3 288 47.9
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.9e-56 223.8 529 35.0
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 7.2e-55 219.2 508 37.6
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.2e-54 218.4 317 47.9
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.0e-53 215.3 332 42.5
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.4e-53 214.9 315 47.6
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.8e-53 214.5 328 44.5
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.3e-53 214.2 315 47.3
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 3.0e-53 213.8 484 37.4
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 3.9e-53 213.4 501 35.5
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 8.8e-53 212.2 439 40.5
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.3e-52 210.3 314 45.9
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.8e-51 207.2 244 50.8
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.1e-50 203.8 489 35.4
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.5e-49 201.4 183 59.6
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.6e-49 200.7 232 51.3
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.6e-49 200.7 312 41.7
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 5.9e-49 199.5 429 37.8
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 7.7e-49 199.1 422 37.4
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 1.0e-48 198.7 277 47.7
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.9e-47 194.5 254 47.2
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 3.6e-46 190.3 332 41.0
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 7.9e-46 189.1 320 42.5
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.0e-45 188.7 320 42.5
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 1.0e-45 188.7 333 42.6
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 2.3e-45 187.6 210 51.4
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.8e-45 185.7 340 42.1
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 7.4e-44 182.6 340 41.8
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 2.2e-43 181.0 187 55.1
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-43 180.6 320 41.6
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 3.7e-43 180.3 320 41.6
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 3.7e-43 180.3 320 41.6
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 4.8e-43 179.9 303 43.6
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.1e-42 176.8 411 36.3
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 9.1e-42 175.6 317 39.1
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.2e-41 175.3 446 34.5
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.5e-41 173.3 306 40.8
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 7.7e-41 172.6 286 43.0
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.0e-40 172.2 301 42.5
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.3e-40 171.8 319 40.1
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.9e-40 170.6 484 32.0
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.9e-39 167.9 177 55.4
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.5e-39 167.5 261 42.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 7.2e-39 166.0 228 45.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.2e-39 166.0 228 45.6
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.1e-38 164.5 344 38.7
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.6e-38 163.7 261 41.8
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 2.6e-36 157.5 570 30.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 9.7e-36 155.6 289 41.5
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 9.7e-36 155.6 260 40.8
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.8e-35 153.3 340 38.8
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 2.4e-34 151.0 177 52.0
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 3.5e-33 147.1 264 39.8
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.2e-30 138.7 181 47.0
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 4.7e-30 136.7 360 33.3
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.2e-28 132.1 179 40.8
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 2.6e-28 131.0 481 29.5
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 4.8e-27 126.7 217 41.9
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.1e-26 125.6 220 40.9
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 9.1e-26 122.5 163 46.0
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 1.6e-25 121.7 134 55.2
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 5.5e-23 113.2 157 42.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 4.7e-22 110.2 174 37.9
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.8e-19 100.9 242 36.4
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 4.1e-18 97.1 291 31.6
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 1.2e-17 95.5 193 37.8
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.7e-17 94.4 316 32.3
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 2.7e-17 94.4 175 38.3
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 1.0e-16 92.4 299 29.1
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.9e-16 90.9 105 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 4.3e-15 87.0 147 38.1
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 9.5e-15 85.9 92 52.2
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 3.6e-14 84.0 105 46.7
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 4.0e-13 80.5 169 34.9
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.5e-12 78.6 59 57.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 2.0e-12 78.2 105 44.8
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 5.7e-12 76.6 165 32.1
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.9e-11 74.3 173 30.6
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.4e-10 72.0 126 39.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 4.1e-10 70.5 191 30.4
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-09 68.6 173 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.7e-09 67.8 180 28.3
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 3.5e-09 67.4 158 30.4
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 1.7e-08 65.1 215 31.6
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 3.0e-08 64.3 84 46.4
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.9e-08 63.9 174 28.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 5.0e-08 63.5 168 27.4
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.6e-08 63.2 177 29.4
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 8.6e-08 62.8 42 64.3
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.1e-07 62.4 195 26.7
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.1e-07 62.4 186 31.7
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.5e-07 62.0 175 29.1
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.9e-07 61.6 160 28.8
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 1.9e-07 61.6 80 43.8
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-07 61.2 160 29.4
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.3e-07 60.8 160 28.8
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.3e-07 60.8 160 27.5
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 3.3e-07 60.8 160 30.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 4.3e-07 60.5 175 26.9
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 5.6e-07 60.1 160 28.8
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 5.6e-07 60.1 160 28.8
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 5.6e-07 60.1 160 28.8
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 9.5e-07 59.3 160 28.1
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 9.5e-07 59.3 160 28.1
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.6e-06 58.5 183 25.1
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.8e-06 57.8 180 28.9
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.8e-06 57.8 160 27.5
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 3.6e-06 57.4 160 26.2
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 8.0e-06 56.2 148 28.4
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 8.0e-06 56.2 169 28.4
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 8.0e-06 56.2 184 25.5


User provided reference genes

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