Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 7.5e-119 430.6 233 100.0
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.8e-80 303.1 226 74.3
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.2e-79 300.4 234 70.9
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.9e-78 295.8 232 71.6
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 6.4e-78 294.7 235 68.1
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.4e-77 292.7 256 68.4
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 9.2e-77 290.8 232 70.7
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.2e-76 290.4 232 70.7
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.7e-76 289.3 236 70.3
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.5e-76 288.9 226 73.5
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 7.8e-76 287.7 238 68.5
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.3e-75 287.0 230 70.4
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 5.6e-74 281.6 226 72.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 9.6e-74 280.8 236 68.6
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-73 280.4 278 60.4
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.2e-73 280.4 219 71.2
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 6.2e-73 278.1 265 63.0
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.0e-72 275.4 240 64.6
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.6e-71 272.7 225 69.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 5.8e-71 271.6 220 70.0
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.9e-71 270.8 225 68.9
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 6.4e-70 268.1 231 69.3
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-69 266.9 225 68.4
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.9e-69 266.5 233 70.0
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.4e-69 266.2 232 64.7
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.2e-69 265.4 236 65.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 4.2e-69 265.4 233 65.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.4e-69 265.0 234 67.1
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 4.6e-68 261.9 236 65.7
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 6.0e-68 261.5 236 65.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.7e-67 260.0 240 67.5
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.9e-66 256.5 227 66.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 7.3e-66 254.6 229 64.6
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 7.3e-66 254.6 231 65.4
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.8e-65 252.7 236 61.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 8.1e-65 251.1 228 66.7
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.1e-64 250.8 225 65.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.1e-64 250.8 235 64.7
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-64 250.4 225 61.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.8e-64 250.0 228 66.7
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.4e-64 249.6 232 62.5
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 4.0e-64 248.8 232 62.9
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 6.9e-64 248.1 232 62.1
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 9.0e-64 247.7 232 63.4
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 9.0e-64 247.7 237 65.4
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 2.0e-63 246.5 227 63.4
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 3.4e-63 245.7 230 63.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.9e-62 242.7 222 62.6
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.4e-62 241.5 232 60.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.1e-61 240.7 226 63.7
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.4e-61 240.4 219 64.4
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.4e-61 240.4 233 61.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 3.2e-61 239.2 232 58.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.7e-60 236.1 229 60.7
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 4.6e-60 235.3 239 58.2
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.0e-60 235.0 232 59.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.0e-59 234.2 227 61.7
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.3e-59 233.8 235 60.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.3e-59 233.0 227 60.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.1e-59 231.9 269 55.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.9e-58 229.9 235 57.0
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 3.3e-58 229.2 227 60.4
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 4.3e-58 228.8 232 56.9
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 7.4e-58 228.0 215 61.9
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 7.4e-58 228.0 265 53.6
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 7.4e-58 228.0 221 61.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 9.6e-58 227.6 227 59.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.6e-57 226.9 225 60.9
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.1e-57 226.5 232 58.6
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.8e-57 226.1 233 57.1
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 4.8e-57 225.3 233 57.1
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 8.1e-57 224.6 235 58.7
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 3.1e-56 222.6 227 59.0
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 3.4e-55 219.2 227 58.1
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 3.4e-55 219.2 227 58.1
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 4.5e-55 218.8 236 57.2
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.3e-54 217.2 222 58.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.8e-54 215.7 235 54.9
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 8.4e-54 214.5 226 59.7
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.1e-53 214.2 224 58.0
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.4e-53 213.0 233 57.9
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.5e-53 211.8 234 57.7
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 7.1e-53 211.5 237 56.5
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 1.2e-52 210.7 232 56.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.6e-52 210.3 232 55.2
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.6e-52 210.3 339 44.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.1e-52 209.9 218 57.3
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.7e-52 209.5 227 57.7
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 3.5e-52 209.1 230 58.3
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 6.0e-52 208.4 235 54.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 7.9e-52 208.0 228 57.0
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 7.9e-52 208.0 228 57.0
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 7.9e-52 208.0 228 57.0
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.3e-51 207.2 234 55.6
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.8e-51 206.8 221 60.6
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.8e-51 206.8 228 55.7
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.8e-51 206.8 228 55.7
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 6.7e-51 204.9 234 56.8
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.3e-50 202.6 188 60.6
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.6e-50 201.8 190 62.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.6e-50 201.8 190 62.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 9.6e-50 201.1 219 56.2
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.8e-49 199.5 226 54.9
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 3.7e-49 199.1 226 56.2
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.1e-48 196.1 232 53.0
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.0e-48 194.5 273 48.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.0e-48 194.5 273 48.7
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.2e-47 194.1 221 55.7
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.5e-47 192.2 226 51.3
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.9e-46 188.7 184 62.0
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 8.4e-46 188.0 216 57.4
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 2.5e-45 186.4 219 53.4
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 5.5e-45 185.3 229 54.6
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 7.1e-45 184.9 227 54.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.7e-44 183.0 230 53.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.7e-44 183.0 234 51.7
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.3e-43 180.6 223 51.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 7.4e-42 174.9 235 49.4
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.7e-38 163.7 169 64.5
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.2e-38 163.3 314 39.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.1e-37 161.0 169 56.8
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.1e-37 161.0 234 47.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.4e-37 160.6 216 49.1
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.4e-37 160.6 216 49.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 4.8e-33 145.6 222 45.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.0e-30 137.9 131 59.5
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.9e-30 136.3 161 53.4
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 5.0e-30 135.6 98 77.6
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.6e-28 130.6 155 56.8
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.6e-28 130.6 215 44.2
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 9.7e-26 121.3 209 42.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.3e-22 110.9 148 50.7
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.9e-21 107.1 255 37.3
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.5e-21 106.7 226 38.9
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.6e-20 104.0 160 46.2
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 8.0e-20 101.7 124 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 3.1e-16 89.7 96 54.2
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.0e-14 84.7 89 56.2
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.7e-12 76.6 79 62.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.0e-11 73.2 91 49.5
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 4.4e-10 69.3 203 36.9
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.3e-09 67.8 156 37.2
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.8e-09 66.6 39 82.1
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.7e-09 66.2 45 77.8
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.2e-09 65.1 45 77.8
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 7.0e-08 62.0 91 42.9
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 7.0e-08 62.0 131 38.9
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 3.5e-07 59.7 54 59.3
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 3.5e-07 59.7 54 59.3
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 5.0e-06 55.8 56 60.7
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 8.5e-06 55.1 209 28.2
Lsat_1_v5_gn_8_72721 Lactuca sativa HOM05D004799 ORTHO05D005500 8.5e-06 55.1 50 64.0


User provided reference genes

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