Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.244 Carica papaya HOM05D002376 ORTHO05D004654 3.5e-64 248.1 120 100.0
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 2.8e-13 79.0 42 78.6
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 8.3e-13 77.4 43 69.8
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 1.8e-12 76.3 43 69.8
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.8e-12 76.3 43 69.8
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.8e-12 76.3 43 69.8
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 4.1e-12 75.1 43 69.8
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 7.0e-12 74.3 43 67.4
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 7.0e-12 74.3 43 67.4
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.2e-11 73.6 43 67.4
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 1.6e-11 73.2 43 69.8
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-11 73.2 43 67.4
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-11 73.2 43 67.4
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-11 73.2 43 67.4
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 5.9e-11 71.2 43 67.4
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.9e-11 71.2 43 65.1
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 5.9e-11 71.2 43 65.1
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 7.7e-11 70.9 43 65.1
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-10 70.1 43 67.4
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 1.7e-10 69.7 43 67.4
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 2.3e-10 69.3 46 65.2
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 2.3e-10 69.3 44 65.9
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.8e-10 68.6 44 63.6
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 6.6e-10 67.8 46 65.2
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 8.6e-10 67.4 43 62.8
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 8.6e-10 67.4 46 65.2
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.1e-09 67.0 43 62.8
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 1.1e-09 67.0 43 67.4
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 1.5e-09 66.6 43 65.1
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 1.5e-09 66.6 43 65.1
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 1.9e-09 66.2 44 61.4
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 1.9e-09 66.2 43 65.1
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 2.5e-09 65.9 43 65.1
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 3.3e-09 65.5 46 63.0
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 4.2e-09 65.1 43 60.5
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 4.2e-09 65.1 41 68.3
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 4.2e-09 65.1 46 60.9
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 4.2e-09 65.1 39 69.2
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 5.5e-09 64.7 43 62.8
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 7.2e-09 64.3 47 61.7
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 7.2e-09 64.3 40 67.5
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 7.2e-09 64.3 43 62.8
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 7.2e-09 64.3 43 60.5
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 9.5e-09 63.9 48 58.3
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 1.2e-08 63.5 43 60.5
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.6e-08 63.2 40 65.0
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 2.1e-08 62.8 44 61.4
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 2.1e-08 62.8 65 47.7
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 2.1e-08 62.8 44 59.1
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.1e-08 62.8 41 63.4
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 2.8e-08 62.4 41 61.0
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.8e-08 62.4 41 63.4
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 3.6e-08 62.0 43 62.8
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 3.6e-08 62.0 49 59.2
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 3.6e-08 62.0 44 56.8
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 3.6e-08 62.0 44 56.8
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 3.6e-08 62.0 44 56.8
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 4.7e-08 61.6 40 62.5
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 4.7e-08 61.6 40 67.5
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 6.1e-08 61.2 43 60.5
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 8.0e-08 60.8 49 59.2
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.0e-08 60.8 44 61.4
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-07 60.5 41 63.4
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.0e-07 60.5 41 63.4
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 1.0e-07 60.5 44 56.8
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-07 60.1 41 61.0
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-07 60.1 41 61.0
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-07 60.1 41 61.0
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.4e-07 60.1 41 61.0
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.4e-07 60.1 45 57.8
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.8e-07 59.7 40 62.5
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.3e-07 59.3 43 55.8
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 2.3e-07 59.3 41 63.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.3e-07 59.3 41 63.4
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 2.3e-07 59.3 42 59.5
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 2.3e-07 59.3 39 64.1
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 3.0e-07 58.9 40 65.0
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 3.0e-07 58.9 43 60.5
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 3.0e-07 58.9 41 61.0
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 4.0e-07 58.5 44 59.1
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 4.0e-07 58.5 45 57.8
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 6.8e-07 57.8 42 61.9
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 8.9e-07 57.4 42 59.5
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 8.9e-07 57.4 41 58.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 8.9e-07 57.4 42 54.8
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 1.2e-06 57.0 41 61.0
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 1.2e-06 57.0 45 53.3
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.5e-06 56.6 41 61.0
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.5e-06 56.6 39 61.5
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 2.0e-06 56.2 42 59.5
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.0e-06 56.2 43 58.1
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 2.0e-06 56.2 41 58.5
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 2.0e-06 56.2 42 57.1
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.0e-06 56.2 41 61.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.0e-06 56.2 41 61.0
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 3.4e-06 55.5 40 60.0
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 4.4e-06 55.1 48 50.0
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 4.4e-06 55.1 41 58.5
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 4.4e-06 55.1 41 56.1
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 5.7e-06 54.7 40 57.5
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 5.7e-06 54.7 40 55.0
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 5.7e-06 54.7 44 50.0
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 5.7e-06 54.7 44 56.8
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 5.7e-06 54.7 41 56.1
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 5.7e-06 54.7 40 65.0


User provided reference genes

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