Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 0.0e+00 1115.5 588 100.0
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 8.0e-186 654.4 562 67.1
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.4e-184 648.7 570 66.3
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 8.3e-183 644.4 574 65.3
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.5e-179 633.6 580 64.0
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.1e-177 625.9 570 64.6
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 8.9e-177 624.4 573 64.4
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 3.4e-176 622.5 559 63.3
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.4e-176 622.5 579 63.7
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 4.4e-176 622.1 579 64.2
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 8.3e-175 617.8 574 63.1
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 3.2e-174 615.9 604 60.9
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 3.2e-174 615.9 600 60.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 3.9e-172 609.0 574 61.7
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 5.1e-172 608.6 569 60.3
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 8.6e-172 607.8 600 59.7
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.3e-171 605.5 571 60.6
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.3e-171 605.5 572 59.8
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.6e-170 603.6 597 60.6
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 1.4e-169 600.5 573 60.2
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.0e-169 599.0 445 72.4
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 5.8e-168 595.1 591 60.6
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 7.5e-168 594.7 598 59.7
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-167 593.6 570 59.8
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-167 593.6 571 59.4
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 1.7e-167 593.6 545 62.9
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 2.2e-167 593.2 572 59.6
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.2e-167 593.2 575 60.2
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.9e-167 592.8 592 58.1
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 6.4e-167 591.7 602 58.8
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.2e-165 587.4 600 58.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 1.2e-165 587.4 648 56.2
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 2.7e-165 586.3 584 59.1
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.3e-164 583.2 596 59.6
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 3.0e-164 582.8 402 74.9
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 3.0e-164 582.8 431 71.0
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 3.0e-164 582.8 595 57.1
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 5.1e-164 582.0 609 56.5
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 6.6e-164 581.6 600 56.8
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.1e-163 580.9 602 59.8
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 7.3e-163 578.2 619 53.8
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 3.6e-162 575.9 578 57.8
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 4.7e-162 575.5 573 61.4
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.2e-160 570.9 590 58.8
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.0e-160 570.1 447 70.2
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 2.6e-160 569.7 587 56.9
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 7.6e-160 568.2 583 57.5
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-159 567.4 453 67.1
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.7e-159 567.0 580 56.6
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 8.4e-159 564.7 580 57.4
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.9e-158 563.5 582 57.0
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 2.4e-158 563.1 602 56.3
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 4.2e-158 562.4 586 56.8
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.4e-158 562.0 602 56.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.3e-156 556.6 592 58.3
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 5.1e-156 555.4 594 55.6
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 7.3e-155 551.6 599 56.8
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 9.6e-155 551.2 576 55.6
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.4e-153 547.4 431 68.4
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-153 547.0 592 55.6
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 6.9e-153 545.0 579 56.8
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 2.6e-152 543.1 571 59.0
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 4.4e-152 542.3 572 57.9
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 9.9e-152 541.2 573 56.4
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 2.9e-151 539.7 574 54.4
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.9e-151 539.7 583 55.2
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.9e-151 539.7 572 56.1
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-150 537.3 577 55.1
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 3.9e-148 529.3 350 77.4
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 8.7e-148 528.1 606 53.3
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 1.9e-147 526.9 589 55.2
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 2.5e-147 526.6 587 54.0
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 5.6e-147 525.4 584 54.5
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.1e-145 521.2 331 80.1
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.4e-145 520.8 594 52.4
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-144 516.9 573 53.9
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 2.1e-141 506.9 564 52.8
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 5.6e-139 498.8 573 53.8
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 1.3e-138 497.7 354 72.6
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 2.9e-135 486.5 369 68.3
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.4e-134 484.2 452 59.5
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 3.2e-134 483.0 626 49.7
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.2e-133 481.1 445 60.4
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 2.1e-130 470.3 576 49.0
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 9.0e-129 464.9 403 63.0
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 2.0e-128 463.8 354 67.5
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 1.7e-127 460.7 598 49.3
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 2.2e-122 443.7 367 64.0
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 8.2e-122 441.8 575 50.4
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 9.0e-121 438.3 381 60.9
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 9.7e-115 418.3 586 46.6
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.2e-114 417.2 572 47.0
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 4.1e-113 412.9 482 52.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 4.5e-112 409.5 578 46.7
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 3.2e-110 403.3 573 47.5
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 5.1e-108 396.0 458 52.0
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.4e-107 392.9 303 67.7
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 6.3e-106 389.0 403 53.3
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 9.1e-105 385.2 436 53.4
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 1.7e-103 380.9 431 50.8
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 6.5e-103 379.0 573 46.2
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 6.5e-103 379.0 308 65.6
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.4e-100 371.3 381 54.6
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-96 357.5 438 50.2
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 2.7e-93 347.1 294 63.9
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 5.0e-87 326.2 712 36.9
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 4.2e-86 323.2 305 59.7
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 4.7e-85 319.7 225 73.3
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 2.3e-84 317.4 442 45.9
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.7e-82 311.2 274 61.7
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 3.1e-81 307.0 412 47.3
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.5e-78 298.1 421 47.0
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 3.3e-78 297.0 283 55.1
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.7e-75 286.2 423 40.9
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 1.0e-68 265.4 345 45.8
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.9e-66 256.5 442 42.3
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.2e-65 253.8 574 36.8
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.8e-59 233.0 354 44.4
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 7.1e-57 226.1 167 65.3
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.6e-53 214.9 137 78.8
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.6e-51 207.6 582 32.3
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.4e-51 206.8 126 80.2
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.8e-45 187.6 143 68.5
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 5.2e-44 183.3 183 57.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.6e-43 181.0 154 66.2
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 3.4e-43 180.6 318 41.5
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.2e-41 173.7 117 76.1
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.4e-41 173.3 126 69.8
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 9.3e-41 172.6 368 32.6
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 2.7e-40 171.0 121 71.1
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.9e-39 167.2 106 77.4
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 5.6e-38 163.3 354 34.2
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.1e-37 161.4 131 67.2
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 9.0e-36 156.0 106 70.8
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 7.6e-35 152.9 100 76.0
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 4.6e-32 143.7 148 54.1
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.3e-31 142.1 152 55.3
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.5e-30 138.7 310 37.1
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 7.4e-30 136.3 87 78.2
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 6.7e-23 113.2 271 35.8
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 4.3e-22 110.5 262 30.5
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 8.1e-21 106.3 262 34.0
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.4e-20 105.5 83 68.7
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 2.6e-19 101.3 68 75.0
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.7e-18 98.6 90 55.6
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.7e-18 98.6 90 55.6
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.7e-18 98.6 90 55.6
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.7e-18 98.6 90 55.6
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 8.4e-18 96.3 64 75.0
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.1e-17 95.9 83 57.8
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-17 95.5 81 59.3
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.2e-16 92.4 66 71.2
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 7.9e-16 89.7 129 45.0
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 9.6e-14 82.8 204 32.8
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 9.6e-14 82.8 204 32.8
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 1.6e-13 82.0 79 59.5
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.8e-12 78.6 252 31.3
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.5e-11 73.9 48 68.8
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 4.5e-11 73.9 48 75.0
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.5e-11 73.9 105 42.9
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.3e-10 72.4 46 80.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 5.0e-10 70.5 51 68.6
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.9e-09 68.6 51 66.7
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.5e-09 67.0 81 44.4
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 9.3e-09 66.2 229 35.4
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 2.1e-08 65.1 39 76.9
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 2.7e-08 64.7 58 50.0
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 2.7e-08 64.7 58 50.0
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 6.1e-08 63.5 37 83.8
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 7.9e-08 63.2 58 48.3
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 5.1e-07 60.5 39 69.2


User provided reference genes

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