Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.8e-254 882.1 449 100.0
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 6.5e-220 767.3 449 88.4
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 1.6e-218 762.7 448 87.7
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.7e-218 761.1 448 88.2
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 4.7e-218 761.1 448 88.2
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.3e-217 758.8 448 87.7
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 5.1e-217 757.7 448 87.7
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 1.3e-215 753.1 449 87.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 2.2e-215 752.3 449 86.4
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 1.2e-213 746.5 449 86.6
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.9e-213 744.2 450 85.3
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 1.7e-212 742.7 450 85.3
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 5.0e-212 741.1 449 85.7
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 8.5e-212 740.3 510 77.6
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 2.5e-211 738.8 449 84.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 4.2e-211 738.0 449 85.3
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 1.2e-210 736.5 446 85.2
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.0e-209 733.4 449 84.0
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.0e-209 733.4 449 84.0
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 1.4e-209 733.0 448 85.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 2.3e-209 732.3 450 84.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.6e-208 728.8 450 83.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 4.4e-208 728.0 448 84.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 4.4e-208 728.0 451 83.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 9.7e-208 726.9 450 85.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 1.3e-207 726.5 448 84.6
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 1.3e-207 726.5 449 84.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 8.2e-207 723.8 449 83.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 2.4e-206 722.2 450 82.9
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 3.1e-206 721.8 452 83.6
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 5.3e-206 721.1 446 83.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.1e-206 720.3 448 82.4
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 2.0e-205 719.2 448 82.8
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 3.5e-205 718.4 448 83.3
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 7.7e-205 717.2 452 83.4
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 1.3e-204 716.5 448 82.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 2.2e-204 715.7 451 82.7
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 2.9e-204 715.3 450 84.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 2.9e-204 715.3 448 83.3
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 3.8e-204 714.9 450 81.6
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 5.5e-203 711.1 448 82.1
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 9.4e-203 710.3 447 81.2
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 3.6e-202 708.4 448 81.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 3.6e-202 708.4 450 80.4
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 5.2e-201 704.5 450 81.3
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 8.8e-201 703.7 511 74.6
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 3.3e-200 701.8 448 81.2
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 5.7e-200 701.0 445 80.4
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 3.7e-199 698.4 447 79.2
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 4.8e-199 698.0 445 79.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 6.3e-199 697.6 445 79.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 8.2e-199 697.2 449 79.5
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.4e-198 696.4 445 78.9
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 1.8e-198 696.0 447 79.2
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 3.1e-198 695.3 446 80.5
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 3.1e-198 695.3 448 80.6
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 4.1e-198 694.9 445 80.2
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 5.3e-198 694.5 446 79.8
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 9.1e-198 693.7 446 79.8
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 1.2e-197 693.3 446 79.4
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 2.7e-197 692.2 453 79.2
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 2.7e-197 692.2 453 79.2
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 4.5e-197 691.4 449 79.5
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 7.7e-197 690.6 449 78.8
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 2.2e-196 689.1 446 79.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 2.9e-196 688.7 446 79.6
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 1.5e-195 686.4 448 78.6
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 9.4e-195 683.7 448 78.8
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 9.4e-195 683.7 448 78.8
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.2e-194 683.3 449 80.0
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.6e-194 681.8 448 80.4
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.6e-194 681.8 448 80.4
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 1.8e-193 679.5 448 78.8
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 1.2e-192 676.8 446 79.1
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 1.2e-192 676.8 446 79.1
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 1.5e-192 676.4 446 79.1
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 1.5e-192 676.4 446 79.1
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.6e-192 675.6 446 78.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 7.5e-192 674.1 598 63.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 2.2e-191 672.5 457 78.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 1.1e-190 670.2 510 71.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 1.7e-188 662.9 451 78.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 1.1e-187 660.2 456 77.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.1e-187 660.2 456 77.6
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.5e-187 659.1 456 77.2
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 4.2e-187 658.3 456 77.6
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 4.2e-187 658.3 455 74.5
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 3.4e-184 648.7 451 77.4
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 9.8e-184 647.1 550 64.9
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 2.2e-183 646.0 444 75.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 1.7e-180 636.3 511 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 6.6e-180 634.4 404 78.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 4.9e-175 618.2 405 77.3
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 2.7e-173 612.5 445 70.8
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 8.6e-172 607.4 749 50.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 1.2e-170 603.6 611 59.4
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 3.6e-170 602.1 445 71.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.4e-166 590.1 447 71.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 4.6e-165 585.1 446 70.4
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 1.2e-154 550.4 399 72.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.8e-153 546.6 459 61.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-144 516.5 445 64.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.9e-126 456.8 283 84.5
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.7e-101 372.5 214 86.0
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-94 350.5 240 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.5e-91 340.9 210 78.6
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.7e-88 328.6 237 72.6
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.7e-85 320.1 260 66.5
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 7.5e-83 312.0 459 40.3
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 2.2e-74 283.9 161 90.1
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 2.8e-74 283.5 167 85.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.0e-71 275.0 161 86.3
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 9.5e-70 268.5 399 39.3
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.6e-64 251.1 225 62.7
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 2.4e-57 227.3 365 36.2
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.6e-53 214.5 244 53.3
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.6e-51 207.2 208 59.6
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.5e-43 181.4 221 49.8
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-38 164.9 92 90.2
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 7.3e-38 162.5 321 30.2
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-35 155.2 93 79.6
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-28 132.1 108 69.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.4e-28 131.0 75 90.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 1.7e-26 124.8 105 66.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 8.4e-26 122.5 69 91.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 2.2e-18 97.8 100 58.0
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-17 94.4 51 90.2
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-17 94.4 51 90.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-16 92.0 51 88.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.9e-16 89.4 179 34.6
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.5e-14 84.3 41 95.1
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.3e-13 82.0 46 84.8
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.1e-12 79.0 73 61.6
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.6e-11 74.3 65 58.5
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.9e-10 70.9 64 54.7
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 1.8e-07 61.6 52 63.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.1e-07 60.1 70 51.4


User provided reference genes

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