Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1763.1 Carica papaya HOM05D001598 ORTHO05D002757 2.5e-96 355.5 191 100.0
Manes.06G018600 Manihot esculenta HOM05D001598 ORTHO05D002757 4.8e-47 191.8 196 60.7
Thhalv10004617m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 1.3e-44 183.7 194 57.7
Sp2g13960 Schrenkiella parvula HOM05D001598 ORTHO05D002757 2.9e-44 182.6 194 55.7
Haze_12029 Corylus avellana HOM05D001598 ORTHO05D002757 5.0e-44 181.8 196 57.7
Carub.0005s0177 Capsella rubella HOM05D001598 ORTHO05D002757 8.5e-44 181.0 193 57.5
TAR629G0383 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.1e-43 180.6 170 62.9
TAR629G1744 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.9e-43 179.9 188 59.0
Prupe.1G272100 Prunus persica HOM05D001598 ORTHO05D002757 2.5e-43 179.5 172 61.0
COL.COLO4_22982 Corchorus olitorius HOM05D001598 ORTHO05D010176 7.2e-43 177.9 198 54.5
MD13G1073900 Malus domestica HOM05D001598 ORTHO05D002757 7.2e-43 177.9 197 58.4
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 6.1e-42 174.9 159 62.3
MD16G1075100 Malus domestica HOM05D001598 ORTHO05D002757 6.1e-42 174.9 197 57.9
Thecc.02G349900 Theobroma cacao HOM05D001598 ORTHO05D002757 1.0e-41 174.1 197 53.3
Duzib251G0726 Durio zibethinus HOM05D001598 ORTHO05D002757 1.8e-41 173.3 196 53.6
Prupe.3G107100 Prunus persica HOM05D001598 ORTHO05D002757 3.0e-41 172.6 195 57.4
Aa31LG2G7420 Aethionema arabicum HOM05D001598 ORTHO05D002757 3.9e-41 172.2 149 62.4
ClCG03G014280 Citrullus lanatus HOM05D001598 ORTHO05D002757 3.9e-41 172.2 166 57.2
CsaV3_1G041940 Cucumis sativus L. HOM05D001598 ORTHO05D002757 5.1e-41 171.8 205 51.7
BcaC03g17175 Brassica carinata HOM05D001598 ORTHO05D002757 1.5e-40 170.2 196 54.6
BolC2t11190H Brassica oleracea HOM05D001598 ORTHO05D002757 1.5e-40 170.2 200 55.5
Gohir.A03G104500 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.5e-40 170.2 195 53.8
PGR119G0480 Punica granatum HOM05D001598 ORTHO05D002757 1.5e-40 170.2 193 52.3
C02p50980 Brassica napus HOM05D001598 ORTHO05D002757 2.5e-40 169.5 196 55.1
Atru.chr11.1822 Acer truncatum HOM05D001598 ORTHO05D002757 1.6e-39 166.8 174 56.3
Sed0011075 Sechium edule HOM05D001598 ORTHO05D002757 1.6e-39 166.8 151 59.6
AT2G02880 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 2.2e-39 166.4 199 52.3
BcaB07g30318 Brassica carinata HOM05D001598 ORTHO05D002757 3.7e-39 165.6 197 50.3
MELO3C015610.2 Cucumis melo HOM05D001598 ORTHO05D002757 3.7e-39 165.6 181 52.5
CARHR145320 Cardamine hirsuta HOM05D001598 ORTHO05D002757 6.3e-39 164.9 192 56.8
TWI18G0113 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 6.3e-39 164.9 192 54.2
Lj8A728T10 Lonicera japonica HOM05D001598 ORTHO05D002757 1.1e-38 164.1 165 57.6
AL5G12440 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 1.4e-38 163.7 150 62.7
Gohir.D03G140800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.4e-38 163.7 195 52.8
Gohir.D03G140900 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.4e-38 163.7 195 52.8
Lalb_Chr10g0098161 Lupinus albus HOM05D001598 ORTHO05D002757 1.8e-38 163.3 167 57.5
Nn4g23114 Nelumbo nucifera HOM05D001598 ORTHO05D002757 1.8e-38 163.3 200 51.0
Solyc01g010570.4 Solanum lycopersicum HOM05D001598 ORTHO05D002757 1.8e-38 163.3 185 58.4
Gohir.D02G129600 Gossypium hirsutum HOM05D001598 ORTHO05D002757 2.4e-38 162.9 195 52.3
Gohir.D02G129700 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.1e-38 162.2 195 52.3
Gorai.003G147700 Gossypium raimondii HOM05D001598 ORTHO05D002757 4.1e-38 162.2 195 52.8
DCAR_021706 Daucus carota HOM05D001598 ORTHO05D002757 9.1e-38 161.0 143 59.4
Gorai.005G145600 Gossypium raimondii HOM05D001598 ORTHO05D002757 9.1e-38 161.0 195 51.8
Gohir.D11G326400 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.5e-37 160.2 197 51.3
Glyma.01G045300 Glycine max HOM05D001598 ORTHO05D002757 3.4e-37 159.1 148 59.5
TPR.G37035 Trifolium pratense HOM05D001598 ORTHO05D002757 4.5e-37 158.7 145 60.0
CSS0022192 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.3e-36 157.1 195 50.3
Nitab4.5_0000141g0270 Nicotiana tabacum HOM05D001598 ORTHO05D002757 1.3e-36 157.1 189 51.9
Sopen01g006220 Solanum pennellii HOM05D001598 ORTHO05D002757 1.3e-36 157.1 185 56.2
vmacro01241 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 1.3e-36 157.1 183 53.0
vmacro01243 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 1.3e-36 157.1 183 53.0
QL03p064604 Quercus lobata HOM05D001598 ORTHO05D002757 1.7e-36 156.8 136 61.0
FvH4_4g31560 Fragaria vesca HOM05D001598 ORTHO05D002757 2.2e-36 156.4 183 54.1
Nitab4.5_0003566g0010 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.2e-36 156.4 189 52.4
A02p33170 Brassica napus HOM05D001598 ORTHO05D002757 3.2e-35 152.5 194 48.5
BraA02t08340Z Brassica rapa HOM05D001598 ORTHO05D002757 3.2e-35 152.5 194 49.0
Aqoxy3G00689 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 5.5e-35 151.8 202 50.5
arahy.Tifrunner.gnm1.ann1.BUM29L Arachis hypogaea HOM05D001598 ORTHO05D002757 5.5e-35 151.8 210 49.0
Cc11_g13210 Coffea canephora HOM05D001598 ORTHO05D002757 7.2e-35 151.4 183 49.2
CANSAT64G1213 Cannabis sativa HOM05D001598 ORTHO05D002757 9.4e-35 151.0 179 55.3
Rhsim12G0061700 Rhododendron simsii HOM05D001645 ORTHO05D002757 9.4e-35 151.0 181 55.2
HanXRQChr12g0371061 Helianthus annuus HOM05D001598 ORTHO05D002757 1.6e-34 150.2 169 53.3
Glyma.02G105700 Glycine max HOM05D001598 ORTHO05D002757 3.6e-34 149.1 152 55.9
arahy.Tifrunner.gnm1.ann1.Z4M8GV Arachis hypogaea HOM05D001598 ORTHO05D002757 4.6e-34 148.7 209 48.8
AUR62028804 Chenopodium quinoa HOM05D001598 ORTHO05D002757 6.1e-34 148.3 146 58.2
Lsat_1_v5_gn_8_4521 Lactuca sativa HOM05D001598 ORTHO05D002757 6.1e-34 148.3 172 55.2
CAN.G38.31 Capsicum annuum HOM05D001598 ORTHO05D002757 7.9e-34 147.9 190 47.9
Medtr5g039440 Medicago truncatula HOM05D001598 ORTHO05D002757 7.9e-34 147.9 167 54.5
RcHm_v2.0_Chr4g0440071 Rosa chinensis HOM05D001598 ORTHO05D002757 7.9e-34 147.9 181 58.0
Sabra15G0003000 Salix brachista HOM05D001598 ORTHO05D002757 7.9e-34 147.9 158 54.4
Lj2g0010789 Lotus japonicus HOM05D001598 ORTHO05D002757 1.0e-33 147.5 191 48.2
FAN12G4270 Fragaria x ananassa HOM05D001598 ORTHO05D002757 1.4e-33 147.1 198 49.5
arahy.Tifrunner.gnm1.ann1.5WK4WG Arachis hypogaea HOM05D001598 ORTHO05D002757 3.0e-33 146.0 209 48.3
ECA234G4840 Erigeron canadensis HOM05D001598 ORTHO05D002757 3.0e-33 146.0 160 53.8
Potri.015G004400 Populus trichocarpa HOM05D001598 ORTHO05D002757 3.0e-33 146.0 161 54.0
THA.LOC104805152 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 3.0e-33 146.0 195 51.3
MBI05_g28392_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 3.9e-33 145.6 203 49.8
Phvul.002G086800 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 3.9e-33 145.6 195 45.6
Ciclev10032165m.g Citrus clementina HOM05D001598 ORTHO05D002757 6.7e-33 144.8 201 49.8
Psat2g121440 Pisum sativum HOM05D001598 ORTHO05D002757 2.0e-32 143.3 193 46.1
Hund25254 Selenicereus undatus HOM05D001598 ORTHO05D002757 2.6e-32 142.9 179 52.5
Lj3C1039T11 Lonicera japonica HOM05D001598 ORTHO05D002757 5.7e-32 141.7 143 56.6
Ca_04769_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 7.4e-32 141.4 147 55.1
Ca_30734_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 7.4e-32 141.4 147 55.1
ATR0564G259 Amborella trichopoda HOM05D001598 ORTHO05D002757 1.3e-31 140.6 144 53.5
Eucgr.G02513 Eucalyptus grandis HOM05D001598 ORTHO05D002757 2.2e-31 139.8 154 58.4
VMungo1215G3305 Vigna mungo HOM05D001598 ORTHO05D002757 2.8e-31 139.4 195 45.6
Ah.02g131210 Amaranthus hybridus HOM05D001645 ORTHO05D002757 6.3e-31 138.3 173 54.3
Oeu013623.1 Olea europaea HOM05D001598 ORTHO05D002757 6.3e-31 138.3 175 47.4
PSO478G0282 Papaver somniferum HOM05D001598 ORTHO05D002757 1.1e-30 137.5 178 48.3
PSO017G4006 Papaver somniferum HOM05D001598 ORTHO05D002757 2.4e-30 136.3 178 48.3
Peaxi162Scf00026g03113 Petunia axillaris HOM05D001598 ORTHO05D002757 3.1e-30 136.0 160 48.8
Migut.L01310 Erythranthe guttata HOM05D001598 ORTHO05D002757 4.5e-29 132.1 188 46.8
SGA_v2.0_scaffold53G19414 Striga asiatica HOM05D001598 ORTHO05D002757 5.9e-29 131.7 176 46.6
EL10Ac6g13181 Beta vulgaris HOM05D001598 ORTHO05D002757 1.3e-28 130.6 149 51.7
CDE06G1877 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 2.2e-28 129.8 150 51.3
SalBow2G3361 Salvia bowleyana HOM05D001598 ORTHO05D002757 2.9e-28 129.4 200 43.0
SalBow2G2991 Salvia bowleyana HOM05D001598 ORTHO05D002757 5.0e-28 128.6 200 43.0
MSTRG.691 Avicennia marina HOM05D001598 ORTHO05D002757 6.5e-28 128.3 169 46.7
CDE06G1865 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 6.5e-28 128.3 150 50.7
HPP92_016856 Vanilla planifolia HOM05D001598 ORTHO05D002757 7.2e-27 124.8 171 47.4
HPP92_016914 Vanilla planifolia HOM05D001598 ORTHO05D002757 1.0e-25 120.9 125 54.4
unitig_22.g6913 Utricularia gibba HOM05D001598 ORTHO05D001528 2.3e-25 119.8 176 44.3
SGA_v2.0_scaffold4653G54517 Striga asiatica HOM05D001598 ORTHO05D002757 7.4e-24 114.8 190 44.2
Sc11g0001820 Simmondsia chinensis HOM05D001598 ORTHO05D002757 4.8e-23 112.1 162 44.4
PGSC0003DMG400009618 Solanum tuberosum HOM05D001598 ORTHO05D002757 4.5e-21 105.5 84 66.7
CiPaw.05G137200 Carya illinoinensis HOM05D001598 ORTHO05D002757 5.9e-21 105.1 83 66.3
Os03g0379400 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 1.9e-19 100.1 196 39.3
AUR62005754 Chenopodium quinoa HOM05D001598 ORTHO05D002757 2.5e-19 99.8 143 45.5
Zm00001eb392280 Zea mays HOM05D001598 ORTHO05D002757 2.1e-18 96.7 174 42.5
FAN17G2100 Fragaria x ananassa HOM05D001598 ORTHO05D010176 5.2e-17 92.0 62 77.4
SEGI_27969 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 6.5e-12 75.1 204 29.4
Aqoxy7G03836 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 9.8e-08 61.2 101 37.6
CSS0038856 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.7e-07 60.5 53 50.9
CAN.G1156.51 Capsicum annuum HOM05D001598 ORTHO05D002757 1.7e-07 60.5 69 47.8
Nitab4.5_0000496g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 1.7e-07 60.5 69 47.8
Nitab4.5_0002704g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.2e-07 60.1 69 47.8
Solyc05g056510.3 Solanum lycopersicum HOM05D001598 ORTHO05D002757 2.2e-07 60.1 101 38.6
Sopen05g034910 Solanum pennellii HOM05D001598 ORTHO05D002757 2.2e-07 60.1 69 47.8
MSTRG.21240 Avicennia marina HOM05D001598 ORTHO05D002757 2.8e-07 59.7 129 31.8
Haze_01397 Corylus avellana HOM05D001598 ORTHO05D002757 2.8e-07 59.7 61 49.2
MD03G1229800 Malus domestica HOM05D001598 ORTHO05D002757 2.8e-07 59.7 68 44.1
MD10G1276700 Malus domestica HOM05D001598 ORTHO05D002757 2.8e-07 59.7 53 50.9
Eucgr.H00336 Eucalyptus grandis HOM05D001598 ORTHO05D002757 3.7e-07 59.3 53 50.9
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 4.8e-07 58.9 68 42.6
Peaxi162Scf00007g01329 Petunia axillaris HOM05D001598 ORTHO05D002757 4.8e-07 58.9 96 38.5
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 4.8e-07 58.9 68 44.1
MD00G1080400 Malus domestica HOM05D001598 ORTHO05D002757 8.3e-07 58.2 53 50.9
ATR0757G133 Amborella trichopoda HOM05D001598 ORTHO05D002757 1.1e-06 57.8 69 46.4
Glyma.15G158100 Glycine max HOM05D001598 ORTHO05D002757 1.1e-06 57.8 68 41.2
MD11G1250300 Malus domestica HOM05D001598 ORTHO05D002757 1.1e-06 57.8 71 46.5
TAR626G1975 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.1e-06 57.8 151 31.1
Ciclev10020578m.g Citrus clementina HOM05D001598 ORTHO05D002757 1.4e-06 57.4 69 46.4
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 1.8e-06 57.0 68 41.2
THA.LOC104821398 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 1.8e-06 57.0 102 38.2
GSVIVG01038094001 Vitis vinifera HOM05D001598 ORTHO05D002757 1.8e-06 57.0 68 41.2
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 2.4e-06 56.6 129 31.0
Prupe.4G179500 Prunus persica HOM05D001598 ORTHO05D002757 2.4e-06 56.6 68 41.2
PGR142G2642 Punica granatum HOM05D001598 ORTHO05D002757 2.4e-06 56.6 102 36.3
CiPaw.02G103200 Carya illinoinensis HOM05D001598 ORTHO05D002757 3.1e-06 56.2 61 45.9
Lj6g0023615 Lotus japonicus HOM05D001598 ORTHO05D002757 3.1e-06 56.2 52 50.0
Medtr1g102335 Medicago truncatula HOM05D001598 ORTHO05D002757 3.1e-06 56.2 59 52.5
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 3.1e-06 56.2 156 31.4
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 5.4e-06 55.5 101 37.6
MBI07_g03083_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 5.4e-06 55.5 69 43.5
Oeu027580.1 Olea europaea HOM05D001598 ORTHO05D002757 5.4e-06 55.5 68 41.2
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 5.4e-06 55.5 68 41.2
Rhsim12G0173100 Rhododendron simsii HOM05D001598 ORTHO05D002757 5.4e-06 55.5 89 33.7
TPR.G31851 Trifolium pratense HOM05D001598 ORTHO05D002757 5.4e-06 55.5 202 30.7
CSS0041589 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 7.0e-06 55.1 101 35.6
Cfa015220 Carpinus fangiana HOM05D001598 ORTHO05D002757 7.0e-06 55.1 102 35.3
Haze_02583 Corylus avellana HOM05D002054 ORTHO05D005362 7.0e-06 55.1 102 35.3
CDE03G0379 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 9.1e-06 54.7 89 36.0
Nn7g37454 Nelumbo nucifera HOM05D001598 ORTHO05D002757 9.1e-06 54.7 179 31.3
Potri.007G133900 Populus trichocarpa HOM05D001598 ORTHO05D002757 9.1e-06 54.7 66 43.9
Sabra07G0108700 Salix brachista HOM05D001598 ORTHO05D002757 9.1e-06 54.7 67 43.3
Sabra07G0121000 Salix brachista HOM05D001598 ORTHO05D002757 9.1e-06 54.7 67 43.3
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 9.1e-06 54.7 52 48.1


User provided reference genes

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