Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 0.0e+00 1359.0 763 100.0
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 3.4e-229 798.9 803 55.3
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 9.3e-227 790.8 829 54.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.5e-224 783.5 790 57.0
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.5e-224 782.7 833 58.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 7.4e-224 781.2 789 56.7
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.2e-223 778.1 790 56.7
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-222 776.9 839 54.4
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 9.3e-219 764.2 801 52.9
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.6e-218 763.5 809 53.2
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 4.6e-218 761.9 817 55.0
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 5.7e-216 755.0 831 52.9
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 5.7e-216 755.0 783 59.3
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 9.7e-216 754.2 819 55.9
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.8e-215 752.7 814 52.9
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.1e-214 750.7 798 53.3
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 3.4e-213 745.7 781 56.0
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.0e-212 741.9 797 55.7
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 6.5e-212 741.5 861 53.8
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 8.5e-212 741.1 794 53.4
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.1e-211 740.7 794 56.3
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 4.2e-211 738.8 793 54.5
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.2e-210 737.3 831 54.3
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.7e-210 736.1 786 55.3
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.0e-209 734.2 778 55.1
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.5e-208 730.3 781 54.9
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 2.2e-207 726.5 631 60.1
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 8.2e-207 724.5 780 53.7
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 3.1e-206 722.6 790 54.2
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 2.6e-205 719.5 758 55.1
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 7.7e-205 718.0 824 53.3
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.7e-204 716.8 787 51.2
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 2.9e-204 716.1 779 53.9
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.1e-203 714.1 828 49.2
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.2e-203 712.2 793 53.2
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 5.5e-203 711.8 759 51.8
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 2.1e-202 709.9 807 51.3
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.7e-202 709.5 837 49.5
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 4.7e-202 708.8 798 49.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 4.7e-202 708.8 800 50.6
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.1e-202 708.4 801 50.4
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 6.1e-202 708.4 826 54.2
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 3.9e-201 705.7 796 48.9
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 2.6e-200 703.0 797 50.6
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.7e-200 701.8 803 49.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 2.8e-199 699.5 773 49.9
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 2.8e-199 699.5 802 50.5
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.7e-199 699.1 803 50.1
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.8e-198 696.8 808 52.2
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.4e-198 696.4 841 52.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 7.0e-198 694.9 852 51.9
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.0e-197 693.3 805 51.9
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 1.9e-195 686.8 828 48.6
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.5e-195 686.4 733 51.0
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 3.6e-194 682.6 805 51.2
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.0e-194 681.4 755 53.2
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.3e-193 679.9 755 52.8
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.9e-193 679.1 791 53.5
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 2.6e-192 676.4 626 55.4
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 3.3e-192 676.0 807 49.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 4.8e-191 672.2 819 49.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.8e-190 670.2 791 48.9
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.2e-189 667.5 742 50.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.6e-189 667.2 802 49.3
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 5.0e-188 662.1 557 61.4
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.1e-187 661.0 786 49.0
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.5e-187 660.6 783 52.4
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.2e-187 659.1 786 49.2
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 2.7e-186 656.4 795 50.8
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.0e-185 652.9 781 51.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.0e-185 652.9 831 48.4
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 6.8e-185 651.7 779 51.2
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.2e-184 651.0 785 50.2
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.5e-184 650.6 780 51.4
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 3.4e-184 649.4 780 51.0
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 9.8e-184 647.9 781 50.3
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.2e-183 646.7 779 50.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.4e-182 643.3 773 51.0
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 7.0e-182 641.7 788 51.4
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.0e-181 640.2 745 52.3
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 3.5e-181 639.4 776 47.4
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.3e-180 637.5 538 61.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.6e-178 630.6 782 50.4
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 8.8e-177 624.8 781 51.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.2e-176 624.4 802 48.1
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.6e-176 623.2 796 47.2
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.4e-174 617.5 706 51.4
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.7e-170 602.4 840 44.9
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 5.2e-169 599.0 712 48.6
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.4e-168 595.9 483 61.1
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.7e-168 595.5 798 44.5
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 8.6e-164 581.6 722 49.7
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 7.3e-155 552.0 591 51.9
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.6e-154 550.8 777 45.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.4e-153 547.7 678 46.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.4e-153 547.7 699 44.8
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.2e-152 544.7 787 45.6
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 6.0e-149 532.3 835 42.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.9e-148 529.6 636 45.9
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.9e-145 518.5 612 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 1.8e-129 467.6 648 41.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.9e-126 457.6 680 39.4
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 7.1e-126 455.7 393 56.7
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.1e-117 427.6 715 36.4
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.3e-116 424.1 387 58.9
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.1e-115 421.8 547 47.3
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 4.3e-115 419.9 758 36.3
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 8.4e-111 405.6 534 42.1
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 6.0e-109 399.4 491 50.9
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.6e-101 374.8 423 54.1
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 9.7e-75 285.8 437 42.1
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.3e-68 264.6 532 31.2
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 6.3e-66 256.5 229 55.0
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 5.4e-57 226.9 392 40.1
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 7.3e-54 216.5 478 34.9
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.2e-53 215.7 412 38.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 6.4e-50 203.4 397 39.8
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.4e-41 175.6 192 49.0
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.7e-31 142.1 317 38.5
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.4e-28 132.5 462 23.2
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 6.4e-26 123.6 90 61.1
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.3e-23 115.9 80 70.0
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 5.1e-23 114.0 200 36.0
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 5.6e-22 110.5 184 39.1
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 3.4e-19 101.3 298 33.6
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 4.9e-18 97.4 198 32.8
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 9.6e-14 83.2 125 36.8
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 4.8e-13 80.9 88 46.6
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 1.1e-09 69.7 67 49.3
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.8e-07 62.4 51 58.8
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 2.3e-07 62.0 52 67.3
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 2.3e-07 62.0 52 67.3
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.5e-06 59.3 201 33.8


User provided reference genes

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