Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.143 Carica papaya HOM05D007973 ORTHO05D011027 1.3e-38 162.5 81 100.0
Cpa.g.c41267 Carica papaya HOM05D002276 ORTHO05D002381 5.0e-38 160.6 79 100.0
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 4.7e-36 154.1 80 95.0
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 4.7e-36 154.1 80 95.0
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 1.4e-35 152.5 80 93.8
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 1.5e-34 149.1 80 92.5
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 2.6e-34 148.3 80 90.0
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 9.8e-34 146.4 80 88.8
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 2.2e-33 145.2 80 87.5
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 2.8e-33 144.8 80 87.5
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 3.7e-33 144.4 80 88.8
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 6.3e-33 143.7 80 87.5
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 1.1e-32 142.9 80 86.2
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 5.4e-32 140.6 74 91.9
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 8.6e-30 133.3 73 89.0
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 4.9e-25 117.5 80 67.5
Cpa.g.sc736.1 Carica papaya HOM05D002276 ORTHO05D002381 1.8e-19 99.0 77 62.3
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.5e-15 84.7 76 53.9
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.5e-15 84.7 76 53.9
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.5e-15 84.7 76 53.9
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.5e-15 84.7 76 53.9
Cpa.g.sc17.133 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-14 81.6 44 84.1
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.1e-11 73.2 76 46.1
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 3.1e-11 71.6 76 48.7
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 8.9e-11 70.1 76 47.4
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 8.9e-11 70.1 76 47.4
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 8.9e-11 70.1 76 47.4
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 8.9e-11 70.1 76 47.4
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 8.9e-11 70.1 76 47.4
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.5e-10 69.3 76 46.1
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 1.5e-10 69.3 77 46.8
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 3.4e-10 68.2 80 43.8
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 3.4e-10 68.2 80 43.8
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 3.4e-10 68.2 76 44.7
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 3.4e-10 68.2 79 44.3
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 4.4e-10 67.8 77 45.5
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 4.4e-10 67.8 79 44.3
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 7.5e-10 67.0 80 41.2
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 9.9e-10 66.6 78 42.3
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 1.3e-09 66.2 79 43.0
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 1.3e-09 66.2 79 43.0
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 1.7e-09 65.9 76 43.4
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 1.7e-09 65.9 79 44.3
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 1.7e-09 65.9 79 43.0
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 1.7e-09 65.9 79 43.0
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 1.7e-09 65.9 79 44.3
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 2.2e-09 65.5 76 44.7
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.2e-09 65.5 79 44.3
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 2.2e-09 65.5 76 44.7
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 2.2e-09 65.5 76 44.7
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.2e-09 65.5 79 44.3
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 2.9e-09 65.1 75 46.7
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 3.7e-09 64.7 75 45.3
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 3.7e-09 64.7 79 43.0
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 3.7e-09 64.7 79 43.0
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 3.7e-09 64.7 80 41.2
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 3.7e-09 64.7 80 41.2
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 3.7e-09 64.7 76 46.1
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 6.4e-09 63.9 76 43.4
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 6.4e-09 63.9 77 45.5
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 6.4e-09 63.9 80 40.0
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 6.4e-09 63.9 80 40.0
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 6.4e-09 63.9 79 41.8
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 6.4e-09 63.9 79 41.8
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 6.4e-09 63.9 77 42.9
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 6.4e-09 63.9 77 44.2
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 8.3e-09 63.5 77 45.5
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 8.3e-09 63.5 78 41.0
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 1.4e-08 62.8 78 43.6
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 1.4e-08 62.8 78 43.6
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 1.4e-08 62.8 68 44.1
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 1.9e-08 62.4 78 43.6
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 4.1e-08 61.2 75 42.7
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 1.6e-07 59.3 76 43.4
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 1.6e-07 59.3 76 43.4
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 2.7e-07 58.5 76 42.1
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 3.5e-07 58.2 78 38.5
THA.LOC104806195 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 3.5e-07 58.2 78 35.9
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 4.6e-07 57.8 78 35.9
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 7.8e-07 57.0 78 37.2
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 1.0e-06 56.6 78 38.5
TWI53G2065 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 1.3e-06 56.2 78 37.2
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 1.3e-06 56.2 78 37.2
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 2.3e-06 55.5 78 37.2
TWI77G0614 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 2.3e-06 55.5 78 37.2
PGR044G1486 Punica granatum HOM05D002276 ORTHO05D002381 3.0e-06 55.1 79 32.9
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 3.9e-06 54.7 78 34.6
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 5.1e-06 54.3 79 31.6
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 5.1e-06 54.3 78 35.9
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 6.6e-06 53.9 79 41.8
Cc02_g05240 Coffea canephora HOM05D002276 ORTHO05D002381 6.6e-06 53.9 78 35.9


User provided reference genes

Program Settings