Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.6e-178 629.4 317 100.0
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 2.1e-154 549.3 309 88.3
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.8e-154 548.9 303 89.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.7e-154 548.5 313 87.5
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 9.0e-153 543.9 309 87.4
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 5.8e-152 541.2 309 86.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.3e-151 540.0 316 85.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 2.2e-151 539.3 324 83.6
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.9e-151 538.9 305 87.9
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 6.5e-151 537.7 311 87.8
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 8.4e-151 537.3 312 86.5
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.5e-150 535.8 317 84.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 5.5e-150 534.6 313 85.0
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.2e-149 533.5 306 86.9
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.1e-149 532.7 304 86.8
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 2.1e-149 532.7 307 85.7
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.7e-149 532.3 309 85.4
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.7e-149 532.3 315 82.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 3.5e-149 531.9 309 86.4
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 4.6e-149 531.6 303 86.1
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 6.0e-149 531.2 302 87.4
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.8e-148 529.6 303 86.1
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.8e-148 529.6 309 86.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.3e-148 529.3 310 85.5
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.0e-148 528.9 318 82.7
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 3.9e-148 528.5 297 86.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 6.7e-148 527.7 319 84.0
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 3.3e-147 525.4 317 83.3
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 4.3e-147 525.0 318 81.4
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.7e-147 523.9 307 84.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.6e-146 523.1 307 85.7
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.6e-146 523.1 307 83.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 6.3e-146 521.2 321 82.2
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.2e-146 520.8 307 85.0
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.8e-145 519.6 314 83.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.3e-145 518.1 307 84.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 6.9e-145 517.7 311 83.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.2e-144 516.9 313 83.1
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.2e-144 516.9 312 82.4
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.5e-144 516.5 359 75.5
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.5e-144 516.5 303 84.5
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 5.9e-144 514.6 310 82.6
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.3e-143 513.5 306 83.3
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 2.9e-143 512.3 311 82.0
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 5.0e-143 511.5 304 82.9
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.1e-142 510.4 309 82.2
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.5e-142 509.2 307 82.7
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.2e-142 508.8 304 83.9
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.6e-141 506.5 316 79.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.1e-141 506.1 320 80.0
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 2.7e-141 505.8 320 79.1
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.6e-141 505.4 303 83.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.6e-141 505.4 345 75.9
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 7.9e-141 504.2 303 82.2
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.4e-140 503.4 304 81.6
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 5.1e-140 501.5 295 85.1
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.0e-139 499.6 316 80.1
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.0e-139 499.6 316 80.1
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.0e-139 499.6 316 80.1
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 4.3e-139 498.4 297 83.5
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 5.7e-139 498.0 316 77.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 5.7e-139 498.0 316 77.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 5.7e-139 498.0 316 77.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.7e-139 498.0 311 80.4
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 2.2e-138 496.1 316 79.1
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.2e-138 496.1 317 79.2
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.2e-138 496.1 310 79.4
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 2.8e-138 495.7 316 77.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 2.8e-138 495.7 316 77.5
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.8e-138 495.7 311 80.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 4.8e-138 495.0 308 79.9
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.1e-137 493.8 316 78.8
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 3.4e-136 488.8 311 79.4
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 4.5e-136 488.4 303 81.2
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.3e-135 486.9 324 78.1
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.3e-135 486.9 310 77.7
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.3e-135 486.9 293 82.9
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 2.2e-135 486.1 324 78.1
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.1e-134 483.8 311 78.5
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.4e-134 483.4 311 78.5
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.2e-134 482.3 310 80.6
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 4.2e-134 481.9 313 78.0
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 5.5e-134 481.5 296 79.1
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 6.1e-133 478.0 326 75.2
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.3e-132 476.1 315 76.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.3e-132 476.1 313 77.6
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 5.7e-131 471.5 313 76.4
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.3e-130 470.3 317 74.1
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.3e-130 470.3 310 74.5
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 1.4e-129 466.8 316 74.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-129 466.8 316 74.7
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.8e-129 466.5 310 75.5
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.4e-129 466.1 316 74.7
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 5.3e-129 464.9 295 78.0
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 5.3e-129 464.9 311 75.6
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 7.0e-129 464.5 295 76.6
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.5e-128 463.4 299 75.9
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.5e-128 463.4 303 77.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 7.7e-128 461.1 308 75.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.0e-127 460.7 321 73.2
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.8e-127 458.8 321 72.9
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.5e-127 457.6 318 73.3
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.1e-126 457.2 258 88.0
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 5.5e-126 454.9 314 75.5
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.8e-124 449.9 256 87.1
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.0e-124 449.1 303 75.2
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.2e-115 420.6 310 70.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.6e-115 419.5 295 71.5
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 7.0e-113 411.4 307 70.0
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.4e-108 397.1 224 86.6
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 5.2e-108 395.2 224 85.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.2e-106 389.8 258 77.1
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 4.8e-106 388.7 303 62.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.8e-105 386.7 305 63.3
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 4.1e-105 385.6 320 65.6
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.0e-105 384.8 292 70.2
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 7.0e-105 384.8 286 65.4
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.0e-103 380.9 278 68.7
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.7e-101 372.1 271 73.8
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.0e-100 369.0 232 79.7
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 7.5e-99 364.8 273 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 2.2e-98 363.2 275 63.6
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 8.3e-98 361.3 236 78.0
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.8e-85 319.7 246 63.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.7e-85 318.9 235 70.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 1.1e-76 291.2 284 48.9
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-73 281.2 310 51.9
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 4.6e-72 275.8 288 48.3
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.6e-72 275.8 149 88.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.8e-68 263.8 166 81.3
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.1e-52 211.5 226 46.5
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.0e-47 194.9 159 64.2
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.0e-44 183.0 105 85.7
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.4e-43 179.9 370 34.3
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 5.5e-41 172.6 291 36.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.0e-39 168.3 194 50.0
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-34 151.4 94 78.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 2.9e-34 150.2 106 72.6
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-34 149.8 94 77.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.8e-34 149.8 94 77.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.9e-33 147.5 114 72.8
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 5.5e-33 146.0 95 82.1
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.1e-32 142.5 128 60.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-21 107.1 71 76.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.1e-17 95.1 100 54.0
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.1e-16 90.9 53 81.1
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.8e-15 87.8 51 80.4
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.0e-15 87.0 59 71.2
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.7e-14 82.8 61 67.2
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.4e-14 82.4 48 79.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.4e-14 82.4 48 79.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.0e-07 62.0 84 42.9


User provided reference genes

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