Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 2.6e-107 393.7 593 100.0
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 2.7e-64 250.8 177 70.6
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 1.5e-62 245.0 168 67.3
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 1.6e-61 241.5 168 69.6
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 2.1e-61 241.1 170 69.4
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 2.1e-61 241.1 168 69.6
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 4.0e-60 236.9 169 68.6
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.2e-59 235.3 166 68.7
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.2e-59 235.3 166 68.7
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.2e-59 235.3 166 68.7
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 2.6e-59 234.2 171 66.7
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 2.6e-59 234.2 171 66.7
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 2.6e-59 234.2 166 68.1
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 4.5e-59 233.4 172 66.3
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 5.8e-59 233.0 169 68.0
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 9.9e-59 232.3 166 68.1
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 1.3e-58 231.9 163 67.5
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 6.4e-58 229.6 168 65.5
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 1.1e-57 228.8 168 63.1
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 1.1e-57 228.8 163 66.9
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 1.9e-57 228.0 177 61.6
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 6.0e-56 223.0 171 63.7
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 2.3e-55 221.1 168 64.3
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 6.7e-55 219.5 169 64.5
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 6.7e-55 219.5 168 64.3
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 6.7e-55 219.5 168 63.1
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 3.3e-54 217.2 166 62.7
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 4.3e-54 216.9 175 62.3
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 7.4e-54 216.1 171 59.1
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 1.6e-53 214.9 171 60.2
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 2.1e-53 214.5 159 63.5
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 2.8e-53 214.2 176 61.4
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 3.7e-53 213.8 171 59.6
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 6.2e-53 213.0 173 61.3
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 6.2e-53 213.0 164 62.2
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 8.1e-53 212.6 170 59.4
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 1.1e-52 212.2 169 58.0
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 4.0e-52 210.3 169 61.5
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 4.0e-52 210.3 167 59.9
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 5.3e-52 209.9 171 59.1
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 9.0e-52 209.1 176 59.7
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 1.5e-51 208.4 167 59.9
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 3.4e-51 207.2 172 60.5
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 7.6e-51 206.1 167 59.3
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 2.9e-50 204.1 173 57.8
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 3.8e-50 203.8 169 59.2
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 4.9e-50 203.4 169 59.8
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 4.9e-50 203.4 169 59.8
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 4.9e-50 203.4 166 60.8
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 6.4e-50 203.0 161 60.9
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 1.1e-49 202.2 167 57.5
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 2.5e-49 201.1 169 59.2
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 3.2e-49 200.7 171 54.4
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 4.2e-49 200.3 169 58.6
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 4.2e-49 200.3 168 60.1
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 7.1e-49 199.5 171 56.7
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 9.3e-49 199.1 162 56.2
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 1.2e-48 198.7 171 50.9
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 1.6e-48 198.4 167 55.1
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.6e-48 198.4 171 56.7
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.6e-48 198.4 171 56.7
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 2.7e-48 197.6 174 56.3
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 7.9e-48 196.1 168 56.0
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 1.0e-47 195.7 171 55.6
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 2.3e-47 194.5 166 53.6
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 3.9e-47 193.7 172 52.9
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 6.7e-47 193.0 162 58.6
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 1.5e-46 191.8 178 52.2
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.9e-46 191.4 142 64.8
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 7.4e-46 189.5 178 54.5
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 9.6e-46 189.1 178 52.8
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 9.6e-46 189.1 172 54.7
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.6e-45 188.3 167 52.7
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 2.8e-45 187.6 176 52.3
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 4.8e-45 186.8 174 55.2
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 1.1e-44 185.7 176 52.3
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.4e-44 185.3 178 53.4
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.4e-44 185.3 178 53.4
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 3.1e-44 184.1 176 51.1
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 3.1e-44 184.1 176 51.1
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 3.1e-44 184.1 176 51.1
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 3.1e-44 184.1 176 51.1
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 2.0e-43 181.4 178 51.7
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 7.6e-43 179.5 175 52.6
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 9.7e-38 162.5 157 52.9
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 1.8e-28 131.7 93 68.8
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 2.4e-28 131.3 175 43.4
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.7e-26 125.2 93 68.8
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 1.4e-23 115.5 93 63.4
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 1.5e-22 112.1 94 57.4
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 3.2e-17 94.4 73 63.0
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.6e-11 75.5 58 58.6
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 1.1e-09 69.3 177 26.0
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 2.5e-09 68.2 157 33.1
Eucgr.E02357 Eucalyptus grandis HOM05D002890 ORTHO05D009847 3.2e-09 67.8 174 25.3
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 1.2e-08 65.9 173 26.0
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.6e-08 65.5 117 30.8
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 2.1e-08 65.1 117 30.8
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 2.7e-08 64.7 166 25.9
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 3.6e-08 64.3 166 24.7
CANSAT80G0235 Cannabis sativa HOM05D002460 ORTHO05D002716 3.6e-08 64.3 163 26.4
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 3.6e-08 64.3 56 50.0
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 4.7e-08 63.9 166 25.3
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 4.7e-08 63.9 166 25.3
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 4.7e-08 63.9 166 25.3
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 4.7e-08 63.9 166 26.5
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 6.1e-08 63.5 117 31.6
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 8.0e-08 63.2 166 24.7
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 8.0e-08 63.2 166 24.7
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 8.0e-08 63.2 166 25.3
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.0e-07 62.8 166 26.5
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 1.4e-07 62.4 166 24.7
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 1.4e-07 62.4 53 49.1
TAR629G2887 Trochodendron aralioides HOM05D002460 ORTHO05D002716 2.3e-07 61.6 175 26.9
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 3.0e-07 61.2 166 25.3
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 3.0e-07 61.2 166 25.9
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 3.0e-07 61.2 166 25.9
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 4.0e-07 60.8 143 27.3
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 4.0e-07 60.8 169 23.7
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 5.2e-07 60.5 117 30.8
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 5.2e-07 60.5 143 26.6
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 5.2e-07 60.5 166 24.1
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 5.2e-07 60.5 141 27.7
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 6.8e-07 60.1 167 25.7
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 6.8e-07 60.1 166 24.1
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 8.8e-07 59.7 166 25.3
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.2e-06 59.3 165 25.5
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.2e-06 59.3 171 24.6
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 1.5e-06 58.9 166 25.3
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 1.5e-06 58.9 166 24.1
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 1.5e-06 58.9 166 24.7
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 2.0e-06 58.5 167 25.1
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 2.0e-06 58.5 166 24.1
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 2.6e-06 58.2 171 25.1
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 2.6e-06 58.2 117 29.9
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 2.6e-06 58.2 117 29.9
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 3.4e-06 57.8 169 24.9
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 3.4e-06 57.8 128 29.7
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 3.4e-06 57.8 174 24.1
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 3.4e-06 57.8 166 23.5
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 3.4e-06 57.8 165 23.0
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 4.4e-06 57.4 143 24.5
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 4.4e-06 57.4 143 24.5
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 4.4e-06 57.4 142 28.2
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 4.4e-06 57.4 117 29.9
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 4.4e-06 57.4 166 24.1
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 5.7e-06 57.0 167 25.1
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 5.7e-06 57.0 160 24.4
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 5.7e-06 57.0 51 52.9
TAR371G0019 Trochodendron aralioides HOM05D002460 ORTHO05D002716 5.7e-06 57.0 175 25.7
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 7.5e-06 56.6 155 23.9
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 7.5e-06 56.6 166 23.5
Phvul.007G037500 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 7.5e-06 56.6 161 24.2
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 7.5e-06 56.6 147 25.9
Sabra15G0107800 Salix brachista HOM05D002460 ORTHO05D002716 7.5e-06 56.6 173 23.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.5e-06 56.6 175 25.7
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 9.7e-06 56.2 145 29.0
SGA_v2.0_scaffold204G41677 Striga asiatica HOM05D007347 ORTHO05D009296 9.7e-06 56.2 52 44.2


User provided reference genes

Program Settings