Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 9.2e-43 176.4 84 100.0
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 8.3e-28 126.7 69 89.9
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.4e-27 125.9 69 89.9
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.9e-27 125.6 61 96.7
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.9e-27 125.6 61 96.7
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.9e-27 125.6 61 96.7
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.9e-27 125.6 69 89.9
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.4e-27 125.2 61 96.7
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.4e-27 125.2 61 96.7
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 2.4e-27 125.2 61 96.7
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 3.2e-27 124.8 63 92.1
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 3.2e-27 124.8 61 96.7
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 3.2e-27 124.8 61 96.7
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 4.1e-27 124.4 61 93.4
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 4.1e-27 124.4 61 95.1
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 5.4e-27 124.0 62 93.5
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 7.0e-27 123.6 61 95.1
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 7.0e-27 123.6 61 93.4
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 7.0e-27 123.6 61 95.1
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 9.2e-27 123.2 63 90.5
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 9.2e-27 123.2 61 95.1
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 9.2e-27 123.2 61 95.1
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 9.2e-27 123.2 61 93.4
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 9.2e-27 123.2 61 91.8
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 9.2e-27 123.2 61 95.1
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.2e-26 122.9 63 90.5
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.2e-26 122.9 63 92.1
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.6e-26 122.5 61 93.4
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 1.6e-26 122.5 61 93.4
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 2.0e-26 122.1 69 85.5
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 2.0e-26 122.1 69 85.5
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 2.0e-26 122.1 61 93.4
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.0e-26 122.1 61 95.1
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 2.7e-26 121.7 63 90.5
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 3.5e-26 121.3 63 87.3
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 3.5e-26 121.3 62 90.3
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.6e-26 120.9 61 91.8
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 4.6e-26 120.9 69 85.5
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 6.0e-26 120.6 69 84.1
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 6.0e-26 120.6 69 87.0
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 7.8e-26 120.2 66 84.8
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 7.8e-26 120.2 61 90.2
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.0e-25 119.8 63 88.9
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.3e-25 119.4 69 82.6
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 1.3e-25 119.4 61 90.2
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.3e-25 119.4 63 88.9
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.3e-25 119.4 69 81.2
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 1.7e-25 119.0 69 82.6
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 1.7e-25 119.0 61 88.5
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.7e-25 119.0 69 82.6
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 2.3e-25 118.6 61 85.2
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 2.3e-25 118.6 61 90.2
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 2.3e-25 118.6 61 90.2
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 3.0e-25 118.2 61 88.5
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 3.9e-25 117.9 63 85.7
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 3.9e-25 117.9 61 91.8
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 6.6e-25 117.1 61 88.5
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 8.6e-25 116.7 61 90.2
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 8.6e-25 116.7 69 81.2
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.5e-24 115.9 61 86.9
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 2.5e-24 115.2 61 86.9
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 2.5e-24 115.2 61 86.9
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 3.3e-24 114.8 61 83.6
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 4.3e-24 114.4 61 85.2
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 5.6e-24 114.0 61 83.6
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 5.6e-24 114.0 69 78.3
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 7.3e-24 113.6 61 82.0
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 9.5e-24 113.2 61 82.0
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.2e-23 112.8 61 82.0
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 1.2e-23 112.8 61 82.0
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 2.1e-23 112.1 61 82.0
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.1e-23 112.1 61 86.9
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.8e-23 111.7 69 76.8
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 2.8e-23 111.7 61 83.6
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 2.8e-23 111.7 62 83.9
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.8e-23 111.7 62 83.9
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 3.6e-23 111.3 61 77.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 3.6e-23 111.3 61 80.3
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 3.6e-23 111.3 61 80.3
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 3.6e-23 111.3 84 69.0
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 4.7e-23 110.9 62 85.5
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.7e-23 110.9 61 82.0
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.7e-23 110.9 61 82.0
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.7e-23 110.9 61 82.0
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 4.7e-23 110.9 61 82.0
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 4.7e-23 110.9 60 81.7
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 6.2e-23 110.5 69 75.4
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 8.1e-23 110.2 62 82.3
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 8.1e-23 110.2 62 82.3
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 1.1e-22 109.8 61 78.7
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.1e-22 109.8 62 83.9
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.3e-22 108.6 61 80.3
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 3.1e-22 108.2 61 80.3
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 6.8e-22 107.1 65 73.8
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.2e-21 106.3 63 73.0
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 2.6e-21 105.1 63 73.0
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 5.8e-21 104.0 62 72.6
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.8e-21 104.0 96 57.3
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 5.8e-21 104.0 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 8.6e-17 90.1 64 62.5
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.5e-16 89.4 61 67.2
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.5e-16 89.4 61 67.2
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 1.5e-16 89.4 61 65.6
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.3e-16 88.2 61 65.6
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.3e-16 88.2 61 65.6
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 1.8e-14 82.4 63 55.6
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 1.8e-14 82.4 63 54.0
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 5.2e-14 80.9 61 54.1
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 3.2e-11 71.6 159 33.3
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 2.3e-09 65.5 62 54.8
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 8.7e-09 63.5 33 93.9
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.1e-08 63.2 32 90.6
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.1e-08 63.2 32 90.6
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.1e-07 58.9 34 79.4
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 3.1e-06 55.1 41 63.4


User provided reference genes

Program Settings