Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 0.0e+00 1187.2 606 100.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.3e-276 956.1 614 78.2
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 8.3e-271 936.8 616 76.3
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.2e-270 934.9 609 77.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.1e-270 934.5 621 76.5
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.3e-268 928.7 612 77.5
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 5.6e-267 924.1 614 76.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.1e-266 920.2 616 76.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 3.1e-265 918.3 613 76.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 4.0e-265 917.9 614 74.9
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 4.0e-265 917.9 614 75.4
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.2e-264 916.4 613 75.9
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 7.6e-264 913.7 614 75.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-262 909.1 614 75.1
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.1e-261 905.6 623 74.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.5e-261 904.8 617 74.7
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 8.7e-260 900.2 612 75.0
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.3e-259 898.3 612 74.8
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.3e-259 898.3 612 74.8
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.8e-258 895.2 617 74.1
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 4.4e-256 887.9 619 73.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.8e-256 887.5 614 73.3
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.2e-255 885.6 613 73.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.8e-255 884.8 614 72.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 3.8e-255 884.8 613 74.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.8e-255 884.8 616 72.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.4e-254 882.1 614 73.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.6e-252 874.0 616 71.9
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.3e-251 871.3 608 73.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.3e-251 871.3 608 73.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 5.6e-251 870.9 604 72.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.6e-251 870.9 624 72.1
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.6e-251 870.9 618 71.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 9.6e-251 870.2 617 72.0
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 9.6e-251 870.2 615 73.2
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.3e-250 869.8 608 71.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.8e-250 868.6 614 72.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.8e-250 867.8 614 71.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.0e-249 864.8 617 71.2
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 4.0e-249 864.8 614 71.5
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 9.0e-249 863.6 740 62.4
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.0e-248 862.4 619 71.1
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 7.6e-248 860.5 614 71.5
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-247 859.8 614 71.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 6.4e-247 857.4 612 72.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.1e-246 856.7 615 71.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.2e-246 854.7 608 71.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 5.4e-246 854.4 607 71.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 7.1e-246 854.0 607 71.2
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 9.3e-246 853.6 614 70.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.1e-245 852.4 607 70.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.1e-245 852.4 606 71.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 4.6e-245 851.3 607 70.8
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 6.0e-245 850.9 608 69.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 6.0e-245 850.9 608 70.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.8e-244 849.4 691 64.5
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.1e-243 846.7 607 70.5
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 4.3e-243 844.7 613 69.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.6e-242 842.8 614 70.4
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.6e-242 842.8 607 69.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.8e-242 842.0 608 70.4
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 4.8e-242 841.3 614 69.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.1e-242 840.5 614 69.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 8.1e-242 840.5 614 69.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.2e-240 836.6 615 69.8
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.9e-239 831.2 612 69.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.1e-238 830.1 606 70.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 4.2e-238 828.2 615 68.8
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.6e-237 826.2 614 68.9
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 5.1e-236 821.2 573 73.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.3e-234 816.6 561 71.7
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.1e-233 812.0 608 67.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.6e-232 808.9 601 69.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.5e-232 808.1 570 71.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.0e-231 807.0 608 67.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.4e-230 803.1 606 67.3
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.9e-230 802.7 606 67.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 7.9e-229 797.3 608 68.9
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 8.7e-228 793.9 614 67.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.2e-223 779.2 590 68.3
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.1e-221 772.7 613 63.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.7e-221 772.3 613 63.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 8.8e-220 767.3 551 71.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.1e-219 766.9 591 66.0
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 4.8e-218 761.5 547 70.9
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.2e-216 756.9 613 64.6
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 7.0e-209 731.1 610 62.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.8e-202 709.1 501 72.9
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.4e-195 685.3 614 59.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.2e-191 672.9 619 58.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 7.2e-182 641.3 609 57.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-174 616.7 686 52.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.7e-173 612.1 677 49.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 5.0e-167 592.0 613 53.5
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.0e-164 582.4 492 63.2
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 7.3e-158 561.6 387 73.9
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.4e-155 552.4 499 58.1
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-153 546.2 374 73.5
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.3e-150 536.2 359 74.7
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 9.9e-139 498.0 360 70.0
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.4e-132 477.6 365 68.8
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 3.3e-126 456.4 436 58.3
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-122 444.1 386 62.7
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.2e-114 417.2 257 81.3
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 8.7e-111 405.2 259 77.2
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.7e-109 399.8 321 63.6
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.8e-108 397.5 645 39.2
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-105 388.3 244 78.7
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.1e-104 382.5 259 73.4
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.7e-96 356.3 232 76.3
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-83 314.7 179 84.4
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.0e-83 314.3 628 36.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 3.7e-69 266.9 222 64.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-66 257.7 223 63.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.4e-54 217.2 168 67.9
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 4.1e-52 210.3 159 67.9
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-47 194.1 109 85.3
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-45 188.7 109 82.6
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.4e-45 186.4 111 80.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-44 185.3 111 81.1
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 2.7e-43 181.0 110 79.1
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-42 179.1 111 77.5
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 8.9e-39 166.0 135 68.1
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-36 158.7 104 72.1
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-36 156.4 119 66.4
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-33 147.5 99 71.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-30 139.0 83 79.5
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-30 138.7 119 62.2
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.0e-30 138.3 82 79.3
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.3e-24 119.0 134 49.3
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.8e-24 117.9 510 26.5
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.2e-24 116.7 81 67.9
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.2e-24 116.7 81 67.9
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-23 114.8 71 76.1
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 69 76.8
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-22 109.4 66 78.8
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.2e-20 104.4 83 55.4
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-18 98.2 55 78.2
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-15 87.8 55 74.5
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.0e-14 85.1 143 41.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-11 75.5 41 80.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 2.1e-11 75.1 182 28.6
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.7e-11 74.7 184 28.3
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-11 73.6 40 82.5
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.0e-10 71.2 50 70.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 5.1e-10 70.5 41 80.5
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.5e-09 68.2 45 73.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 8.2e-08 63.2 41 65.9
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-07 60.8 46 65.2
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 4.0e-07 60.8 45 66.7


User provided reference genes

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