Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 3957.5 2017 100.0
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 3463.3 2054 86.4
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 3454.5 2067 85.2
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 3446.8 2064 85.1
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 3443.7 2063 85.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 3441.0 2066 84.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 3432.1 2056 85.7
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 3414.4 2058 85.1
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3414.0 2058 85.2
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 3409.0 2067 84.1
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3406.7 2058 84.9
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 3406.3 2064 84.2
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3401.3 2057 85.0
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 3399.4 2066 84.3
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3376.6 2067 83.3
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 3361.6 2067 83.2
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 3360.9 2066 83.5
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 3360.1 2064 83.2
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3355.8 2055 83.8
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3350.5 2069 82.7
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 3348.9 2070 82.8
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3347.0 2067 82.9
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 3325.8 2071 82.2
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 3321.6 2071 82.1
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3300.4 2056 82.3
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 3298.4 2071 80.9
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 3298.4 2071 80.9
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3297.7 2068 82.2
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3297.7 2068 82.2
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 3292.3 2073 81.4
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 3292.3 2066 81.4
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3290.0 2069 81.0
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3287.3 2072 81.1
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 3281.5 2070 81.3
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 3266.9 2071 80.5
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 3258.8 2066 80.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 3255.7 2071 80.4
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 3253.0 2063 81.0
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 3250.3 2068 79.7
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 3247.6 2056 80.9
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 3243.0 2072 80.6
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3235.3 2072 80.3
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 3228.3 2055 80.4
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 3227.6 2069 79.7
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 3225.6 2068 79.7
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 3213.3 2062 79.8
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 3211.4 2067 79.5
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 3208.3 2068 79.3
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 3203.3 2063 79.4
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 3201.0 2056 78.8
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 3200.6 2065 79.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 3199.1 2068 79.2
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 3198.7 2063 79.4
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 3197.1 2061 79.3
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 3196.8 2065 79.3
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 3196.0 2062 79.7
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 3192.5 2068 79.1
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 3192.1 2065 79.0
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 3191.0 2064 78.9
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 3189.1 2054 78.9
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 3187.9 2063 79.2
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 3170.6 2067 78.0
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 3162.9 2055 78.0
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3155.2 2056 78.6
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3154.8 2066 78.3
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 3153.6 2062 78.0
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3151.7 2066 78.3
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 3148.2 2058 78.7
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3127.8 2077 77.5
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 3125.1 2074 78.1
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 3105.9 2055 78.1
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 3074.6 2041 77.5
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 3073.1 2078 77.3
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 3038.4 1752 87.4
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 3014.6 1932 79.6
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2977.6 1754 85.6
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 2941.8 2068 74.1
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 2936.0 1754 84.7
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2933.7 1752 84.4
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 2918.3 2071 72.7
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2910.2 1755 84.2
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2910.2 1755 84.2
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2910.2 1822 81.9
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 2879.0 1749 83.7
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 2877.4 2073 73.4
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 2838.9 2091 70.1
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 2838.1 2075 70.7
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2827.4 1749 81.4
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 2783.8 1756 81.0
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 2738.0 1734 81.1
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 2724.5 1885 76.5
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 2715.3 1855 73.8
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2701.4 2070 68.7
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2681.0 2070 68.3
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2584.7 2059 66.0
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 2530.4 2128 62.3
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2462.2 1751 74.5
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 2417.5 2065 61.3
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2413.3 2101 60.8
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2382.8 2101 59.5
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2378.6 1718 72.9
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 2064.7 2233 52.4
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 1697.2 1024 82.9
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 1673.7 1437 63.3
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1438.3 970 74.2
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1412.5 1036 72.6
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 1330.1 786 82.3
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1198.0 1399 50.4
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 1186.8 735 84.2
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1159.1 1383 49.6
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 5.2e-301 1038.9 1020 58.8
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.6e-241 841.3 648 67.7
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 2.6e-212 744.2 842 53.8
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 5.2e-200 703.4 425 80.0
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 1.4e-197 695.3 425 79.3
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 4.9e-174 617.1 389 78.9
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 1.7e-134 485.7 2635 24.3
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 4.2e-133 481.1 828 40.7
PGSC0003DMG402001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 2.0e-82 312.8 276 62.3
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 4.0e-59 235.3 147 83.0
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 7.3e-45 188.0 332 41.9
Sabra11G0092200 Salix brachista HOM05D003926 ORTHO05D005273 9.9e-34 151.0 234 44.4
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 1.5e-29 137.1 106 73.6
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 6.4e-25 121.7 105 68.6
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 3.0e-22 112.8 120 55.8
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 1.2e-15 90.9 62 72.6
Hma1.2p1_0587F.1_g184120 Hydrangea macrophylla HOM05D003926 ORTHO05D005273 2.8e-12 79.7 51 72.5
VMungo0540G1361 Vigna mungo HOM05D003926 ORTHO05D005273 4.5e-10 72.4 91 44.0
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 1.4e-08 67.4 63 49.2
ATR0585G095 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.6e-07 63.9 53 54.7
Psat2g102800 Pisum sativum HOM05D038693 ORTHO05D320111 4.6e-07 62.4 136 32.4


User provided reference genes

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