Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 5.5e-47 190.7 99 100.0
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.6e-46 188.0 99 97.0
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.8e-45 185.7 99 94.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.0e-45 184.5 99 94.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.0e-45 184.5 99 94.9
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.0e-45 184.5 99 94.9
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 8.8e-45 183.3 99 93.9
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.0e-44 182.2 99 93.9
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.6e-44 181.8 99 93.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.4e-44 181.4 99 92.9
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-43 179.1 99 91.9
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.2e-43 178.7 100 93.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.2e-43 178.7 99 91.9
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.8e-43 178.3 100 93.0
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.8e-43 178.3 99 92.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.8e-43 178.3 97 91.8
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.8e-43 178.3 99 91.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.8e-43 178.3 99 91.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.8e-43 178.3 99 91.9
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.7e-43 177.9 99 90.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.7e-43 177.9 99 90.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.7e-43 177.9 99 90.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.7e-43 177.9 99 90.9
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.8e-43 177.6 99 90.9
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 4.8e-43 177.6 100 93.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 4.8e-43 177.6 100 93.0
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 4.8e-43 177.6 100 93.0
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 4.8e-43 177.6 99 92.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 4.8e-43 177.6 100 93.0
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.8e-43 177.6 99 89.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 6.3e-43 177.2 101 92.1
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 6.3e-43 177.2 101 92.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 6.3e-43 177.2 99 91.9
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 6.3e-43 177.2 99 91.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.3e-43 177.2 99 91.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.3e-43 177.2 99 90.9
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 8.3e-43 176.8 98 90.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 8.3e-43 176.8 99 91.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 89.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.1e-42 176.4 101 91.1
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-42 176.4 101 91.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.1e-42 176.4 101 92.1
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 89.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.1e-42 176.4 99 91.9
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.1e-42 176.4 98 89.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.4e-42 176.0 99 89.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.4e-42 176.0 98 91.8
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.4e-42 176.0 99 91.9
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.4e-42 176.0 99 91.9
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.4e-42 176.0 99 91.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.4e-42 176.0 99 90.9
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.1e-42 174.9 99 91.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.1e-42 174.9 99 91.9
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 7.0e-42 173.7 101 91.1
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 7.0e-42 173.7 99 88.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 7.0e-42 173.7 99 90.9
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 7.0e-42 173.7 99 90.9
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 7.0e-42 173.7 99 90.9
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.1e-42 173.3 99 89.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.1e-42 173.3 99 89.9
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 9.1e-42 173.3 97 89.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 9.1e-42 173.3 99 89.9
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 9.1e-42 173.3 99 89.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 9.1e-42 173.3 99 88.9
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.1e-42 173.3 98 88.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.2e-41 172.9 98 87.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.2e-41 172.9 99 90.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.2e-41 172.9 99 90.9
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.6e-41 172.6 97 90.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-41 172.6 100 91.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.6e-41 172.6 101 89.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.6e-41 172.6 99 88.9
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.0e-41 172.2 99 88.9
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.0e-41 172.2 101 90.1
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.0e-41 172.2 99 89.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.7e-41 171.8 99 88.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.7e-41 171.8 99 89.9
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.5e-41 171.4 99 87.9
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.5e-41 171.4 99 86.9
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.5e-41 171.0 99 88.9
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.0e-40 169.9 99 88.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.3e-40 169.5 99 86.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-40 169.5 99 88.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.7e-40 169.1 99 84.8
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.3e-40 168.7 106 84.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.3e-40 168.7 124 74.2
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.3e-40 168.7 99 84.8
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.0e-40 167.5 99 83.8
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.0e-40 167.5 98 85.7
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 8.6e-40 166.8 99 83.8
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-39 166.4 98 84.7
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.1e-39 166.4 98 84.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.2e-39 164.9 99 85.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.1e-38 162.2 98 81.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.1e-38 162.2 100 85.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.8e-38 161.8 99 83.8
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.7e-38 161.0 98 81.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 6.8e-37 157.1 105 80.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 4.4e-36 154.5 96 78.1
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.1e-34 148.3 97 75.3
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.5e-33 144.8 99 73.7
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.1e-30 135.6 99 75.8
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 6.1e-30 134.0 97 68.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 5.7e-28 127.5 80 80.0
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.7e-27 125.9 87 73.6
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.7e-27 124.8 67 91.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.9e-27 124.4 66 93.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-26 123.2 74 83.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-26 123.2 74 83.8
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.2e-26 120.2 67 88.1
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-25 119.8 70 88.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 2.0e-25 119.0 66 87.9
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 5.9e-25 117.5 68 89.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.0e-24 114.4 66 86.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.9e-23 112.5 63 92.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.9e-23 112.5 63 92.1
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.9e-23 112.5 99 64.6
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.1e-22 109.0 58 96.6
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 5.8e-20 100.9 56 92.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.2e-18 95.1 60 75.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.7e-17 92.0 51 86.3
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 3.9e-16 88.2 99 53.5
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.3e-15 84.7 90 54.4
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.6e-15 84.3 51 74.5
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 6.8e-13 77.4 40 90.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.4e-12 74.7 59 62.7
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 7.5e-12 73.9 50 76.0
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.2e-11 72.4 130 37.7
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.4e-11 70.9 40 82.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.1e-10 67.4 87 48.3
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.8e-09 63.9 129 38.8
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.1e-06 55.8 114 36.8


User provided reference genes

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